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2GW2
Asym. Unit
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Asym.Unit (35 KB)
Biol.Unit 1 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PEPTIDYL-PROLYL ISOMERASE DOMAIN OF HUMAN CYCLOPHILIN G
Authors
:
G. Bernstein, W. Tempel, T. Davis, E. M. Newman, P. J. Finerty Jr. , F. Mackenzie, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon, Structural Genomics Consortium (Sgc)
Date
:
03 May 06 (Deposition) - 13 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Mutation, Surface Mutagenesis, Mutant, Ppiase, Domain, Cis- Trans Isomerization, Peptidyl-Prolyl Isomerase, Protein Folding, Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Bernstein, W. Tempel, T. Davis, E. M. Newman, P. J. Finerty Jr. , F. Mackenzie, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon, Structural Genomics Consortium (Sgc)
Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: UNKNOWN ATOM OR ION (UNXa)
1b: UNKNOWN ATOM OR ION (UNXb)
1c: UNKNOWN ATOM OR ION (UNXc)
1d: UNKNOWN ATOM OR ION (UNXd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
UNX
4
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:152
BINDING SITE FOR RESIDUE UNX A 1001
2
AC2
SOFTWARE
HIS A:59 , TYR A:60 , LYS A:61 , CYS A:63 , PHE A:79
BINDING SITE FOR RESIDUE UNX A 1002
3
AC3
SOFTWARE
ALA A:113 , ASN A:114 , HIS A:138
BINDING SITE FOR RESIDUE UNX A 1003
4
AC4
SOFTWARE
GLU A:38 , LYS A:48 , HOH A:210
BINDING SITE FOR RESIDUE UNX A 1004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (A:11-176)
2: CSA_PPIASE_1 (A:60-77)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIG_HUMAN
11-176
1
A:11-176
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIG_HUMAN
60-77
1
A:60-77
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Exons
(7, 7)
Info
All Exons
Exon 1.4a (A:7-21)
Exon 1.5 (A:21-46)
Exon 1.6b (A:46-82)
Exon 1.7 (A:82-97)
Exon 1.8 (A:97-126)
Exon 1.9 (A:126-136)
Exon 1.10 (A:136-179)
View:
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All Exon Boundaries
1: Boundary 1.3/1.4a
2: Boundary 1.4a/1.5
3: Boundary 1.5/1.6b
4: Boundary 1.6b/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
8: Boundary 1.10/1.11d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000260970
1a
ENSE00001387482
chr2:
170440850-170441000
151
PPIG_HUMAN
-
0
0
-
-
1.3
ENST00000260970
3
ENSE00001368659
chr2:
170460152-170460204
53
PPIG_HUMAN
-
0
0
-
-
1.4a
ENST00000260970
4a
ENSE00002155403
chr2:
170460536-170460612
77
PPIG_HUMAN
1-21
21
1
A:7-21
15
1.5
ENST00000260970
5
ENSE00001740210
chr2:
170460697-170460771
75
PPIG_HUMAN
21-46
26
1
A:21-46
26
1.6b
ENST00000260970
6b
ENSE00000934245
chr2:
170462549-170462656
108
PPIG_HUMAN
46-82
37
1
A:46-82
37
1.7
ENST00000260970
7
ENSE00000934246
chr2:
170463614-170463658
45
PPIG_HUMAN
82-97
16
1
A:82-97
16
1.8
ENST00000260970
8
ENSE00000782027
chr2:
170465181-170465268
88
PPIG_HUMAN
97-126
30
1
A:97-126
30
1.9
ENST00000260970
9
ENSE00000934247
chr2:
170470974-170471003
30
PPIG_HUMAN
126-136
11
1
A:126-136
11
1.10
ENST00000260970
10
ENSE00001016133
chr2:
170471095-170471234
140
PPIG_HUMAN
136-183
48
1
A:136-179
44
1.11d
ENST00000260970
11d
ENSE00001016132
chr2:
170487284-170487497
214
PPIG_HUMAN
183-254
72
0
-
-
1.12c
ENST00000260970
12c
ENSE00000934248
chr2:
170488276-170488443
168
PPIG_HUMAN
254-310
57
0
-
-
1.13a
ENST00000260970
13a
ENSE00000782033
chr2:
170489670-170489757
88
PPIG_HUMAN
310-339
30
0
-
-
1.14a
ENST00000260970
14a
ENSE00000782034
chr2:
170492602-170492738
137
PPIG_HUMAN
340-385
46
0
-
-
1.15e
ENST00000260970
15e
ENSE00001824624
chr2:
170492923-170497916
4994
PPIG_HUMAN
385-754
370
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2gw2a_ (A:)
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(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
automated matches
(38)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d2gw2a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (35 KB)
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