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2GUE
Asym. Unit
Info
Asym.Unit (49 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH N-ACETYLGLUCOSAMINE
Authors
:
N. E. Ziolkowska, A. Wlodawer
Date
:
29 Apr 06 (Deposition) - 01 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.02
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Griffithsin, Lectins, Domain Swapping, Mannose Binding, Hiv, Sars, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. E. Ziolkowska, B. R. O'Keefe, T. Mori, C. Zhu, B. Giomarelli, F. Vojdani, K. E. Palmer, J. B. Mcmahon, A. Wlodawer
Domain-Swapped Structure Of The Potent Antiviral Protein Griffithsin And Its Mode Of Carbohydrate Binding.
Structure V. 14 1127 2006
[
close entry info
]
Hetero Components
(4, 29)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
EDO
21
Ligand/Ion
1,2-ETHANEDIOL
3
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
5
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR B:28 , GLY B:66 , ASP B:67 , TYR B:68 , ASP B:70 , GLU B:75 , ARG B:81 , GLY B:89 , GLY B:90
BINDING SITE FOR RESIDUE NAG B 122
02
AC2
SOFTWARE
TYR B:68 , GLY B:108 , ASP B:109 , TYR B:110 , ASP B:112
BINDING SITE FOR RESIDUE SO4 B 201
03
AC3
SOFTWARE
TYR A:68 , GLY A:108 , ASP A:109 , TYR A:110 , ASP A:112
BINDING SITE FOR RESIDUE SO4 A 202
04
AC4
SOFTWARE
SER A:27 , GLY A:87 , SER A:88 , LYS B:99 , TYR B:121 , HOH B:340
BINDING SITE FOR RESIDUE SO4 B 203
05
AC5
SOFTWARE
HIS A:4 , LYS A:6 , ARG B:80 , HOH B:374
BINDING SITE FOR RESIDUE SO4 A 204
06
AC6
SOFTWARE
ARG B:64 , ARG B:81 , ALA B:92 , HOH B:343
BINDING SITE FOR RESIDUE SO4 B 205
07
AC7
SOFTWARE
SER B:16 , LEU B:18 , GLU B:56 , TYR B:57 , ILE B:58 , VAL B:100
BINDING SITE FOR RESIDUE EDO B 301
08
AC8
SOFTWARE
GLY A:17 , LEU A:18 , ASP A:35 , GLN A:102 , GLY B:17 , LEU B:18 , ASP B:35 , GLN B:102
BINDING SITE FOR RESIDUE EDO A 302
09
AC9
SOFTWARE
ASN A:60 , MET A:61 , THR A:62 , SER A:73 , PHE A:74 , THR A:94
BINDING SITE FOR RESIDUE EDO A 303
10
BC1
SOFTWARE
SER A:16 , LEU A:18 , PHE A:52 , GLU A:56 , TYR A:57 , ILE A:58 , VAL A:100 , HOH A:356
BINDING SITE FOR RESIDUE EDO A 304
11
BC2
SOFTWARE
ASN A:104 , ASP A:115 , TYR A:117 , EDO A:307
BINDING SITE FOR RESIDUE EDO A 305
12
BC3
SOFTWARE
SER A:65 , GLY A:66 , HOH A:366 , PHE B:7 , GLY B:8 , HOH B:371
BINDING SITE FOR RESIDUE EDO B 306
13
BC4
SOFTWARE
GLY A:105 , SER A:106 , SER A:113 , EDO A:305 , HOH A:377 , LYS B:6 , PHE B:15
BINDING SITE FOR RESIDUE EDO A 307
14
BC5
SOFTWARE
PRO A:14 , ALA A:22 , LEU A:46 , SER A:47 , PRO A:48 , THR A:49 , HOH A:324 , HOH A:328
BINDING SITE FOR RESIDUE EDO A 308
15
BC6
SOFTWARE
ARG A:81 , HOH A:345 , HOH A:378 , ARG B:24 , HIS B:38 , LEU B:46 , HOH B:325 , HOH B:370
BINDING SITE FOR RESIDUE EDO B 309
16
BC7
SOFTWARE
PHE A:50 , THR A:51 , GLY A:53 , GLU A:56 , ARG A:80 , HOH A:332
BINDING SITE FOR RESIDUE EDO A 310
17
BC8
SOFTWARE
SER A:25 , GLY A:26 , TYR A:85 , GLY A:86 , EDO A:315 , HOH A:350 , HOH A:372 , HOH A:379
BINDING SITE FOR RESIDUE EDO A 311
18
BC9
SOFTWARE
LEU A:46 , PRO A:48 , TYR A:85 , EDO A:315 , EDO B:321
BINDING SITE FOR RESIDUE EDO A 312
19
CC1
SOFTWARE
SER B:59 , ASN B:60 , SER B:96 , ASN B:97 , HOH B:375
BINDING SITE FOR RESIDUE EDO B 313
20
CC2
SOFTWARE
ASN A:93 , THR A:94
BINDING SITE FOR RESIDUE EDO A 314
21
CC3
SOFTWARE
VAL A:23 , SER A:25 , ASN A:45 , SER A:47 , TYR A:85 , EDO A:311 , EDO A:312 , HOH A:350
BINDING SITE FOR RESIDUE EDO A 315
22
CC4
SOFTWARE
PHE A:15 , SER A:16 , SER A:19 , HOH A:371 , HOH A:384 , HIS B:39
BINDING SITE FOR RESIDUE EDO A 316
23
CC5
SOFTWARE
SER B:27 , TYR B:28 , ASP B:30
BINDING SITE FOR RESIDUE EDO B 317
24
CC6
SOFTWARE
THR B:62 , ARG B:64 , ASN B:71 , ILE B:72 , SER B:73
BINDING SITE FOR RESIDUE EDO B 318
25
CC7
SOFTWARE
PHE A:15 , ASN B:104 , GLY B:105 , ASP B:115 , TYR B:117
BINDING SITE FOR RESIDUE EDO B 319
26
CC8
SOFTWARE
THR A:62 , SER A:73 , PRO A:84 , HOH A:330 , HOH A:361
BINDING SITE FOR RESIDUE EDO A 320
27
CC9
SOFTWARE
EDO A:312 , ARG B:24 , ASN B:45 , LEU B:46
BINDING SITE FOR RESIDUE EDO B 321
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: JACALIN_LECTIN (A:1-120,B:1-120)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JACALIN_LECTIN
PS51752
Jacalin-type lectin domain profile.
GRFIN_GRISQ
1-120
2
A:1-120
B:1-120
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2guea1 (A:1-121)
1b: SCOP_d2gueb1 (B:1-121)
View:
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Classes
(
)
(
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Folds
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Superfamilies
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(
)
Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
Mannose-binding lectins
(42)
Family
:
Mannose-binding lectins
(32)
Protein domain
:
Griffithsin
(8)
Red alga (Griffithsia) [TaxId: 35158]
(7)
1a
d2guea1
A:1-121
1b
d2gueb1
B:1-121
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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]
Atom Selection
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Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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