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2GUD
Asym. Unit
Info
Asym.Unit (104 KB)
Biol.Unit 1 (99 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN WITH MANNOSE AT 0.94 A RESOLUTION
Authors
:
N. E. Ziolkowska, A. Wlodawer
Date
:
29 Apr 06 (Deposition) - 01 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.94
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Griffithsin, Lectins, Domain Swapping, Mannose Binding, Hiv, Sars, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. E. Ziolkowska, B. R. O'Keefe, T. Mori, C. Zhu, B. Giomarelli, F. Vojdani, K. E. Palmer, J. B. Mcmahon, A. Wlodawer
Domain-Swapped Structure Of The Potent Antiviral Protein Griffithsin And Its Mode Of Carbohydrate Binding.
Structure V. 14 1127 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: 1,2-ETHANEDIOL (EDOa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
5a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
5
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:108 , ASP A:109 , TYR A:110 , ASP A:112 , HOH A:562 , HOH A:572 , HOH A:582 , HOH A:585 , HOH A:715 , GLY B:12
BINDING SITE FOR RESIDUE MAN A 122
02
AC2
SOFTWARE
GLY A:108 , ASP A:109 , TYR A:110 , ASP A:112 , HOH A:562 , HOH A:585 , HOH A:705 , HOH A:715 , GLY B:11 , GLY B:12
BINDING SITE FOR RESIDUE BMA A 123
03
AC3
SOFTWARE
GLY A:26 , SER A:27 , TYR A:28 , ASP A:30 , GLY A:43 , GLY A:44 , HOH A:549 , HOH A:561 , HOH A:571 , HOH A:579
BINDING SITE FOR RESIDUE MAN A 124
04
AC4
SOFTWARE
GLY A:66 , ASP A:67 , TYR A:68 , ASP A:70 , GLY A:89 , GLY A:90 , HOH A:514 , HOH A:627 , SER B:27 , GLY B:87 , SER B:88 , GLY B:89 , HOH B:503 , HOH B:532
BINDING SITE FOR RESIDUE MAN A 125
05
AC5
SOFTWARE
TYR A:28 , GLY A:66 , ASP A:67 , TYR A:68 , ASP A:70 , GLY A:89 , GLY A:90 , HOH A:514 , SER B:27 , TYR B:28 , SER B:88 , HOH B:532
BINDING SITE FOR RESIDUE BMA A 126
06
AC6
SOFTWARE
GLY A:11 , GLY A:12 , GLY B:108 , ASP B:109 , TYR B:110 , ASP B:112 , HOH B:590 , HOH B:631 , HOH B:716 , HOH B:719
BINDING SITE FOR RESIDUE MAN B 122
07
AC7
SOFTWARE
SER A:27 , HOH A:508 , GLY B:26 , SER B:27 , TYR B:28 , ASP B:30 , GLY B:43 , GLY B:44 , HOH B:524 , HOH B:565 , HOH B:622 , HOH B:640 , HOH B:708
BINDING SITE FOR RESIDUE MAN B 123
08
AC8
SOFTWARE
SER A:91 , HOH A:514 , HOH A:699 , TYR B:28 , GLY B:66 , ASP B:67 , TYR B:68 , ASP B:70 , GLY B:89 , GLY B:90 , HOH B:553 , HOH B:576 , HOH B:584
BINDING SITE FOR RESIDUE MAN B 124
09
AC9
SOFTWARE
ARG B:64 , SER B:91 , ALA B:92 , HOH B:595 , HOH B:597 , HOH B:641 , HOH B:657 , HOH B:720
BINDING SITE FOR RESIDUE SO4 B 501
10
BC1
SOFTWARE
ASN A:60 , MET A:61 , THR A:62 , SER A:73 , PHE A:74 , GLU A:75 , ARG A:81 , THR A:94 , HOH A:665
BINDING SITE FOR RESIDUE EDO A 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: JACALIN_LECTIN (A:1-120,B:1-120)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JACALIN_LECTIN
PS51752
Jacalin-type lectin domain profile.
GRFIN_GRISQ
1-120
2
A:1-120
B:1-120
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2guda1 (A:1-121)
1b: SCOP_d2gudb1 (B:1-121)
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Classes
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(
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
Mannose-binding lectins
(42)
Family
:
Mannose-binding lectins
(32)
Protein domain
:
Griffithsin
(8)
Red alga (Griffithsia) [TaxId: 35158]
(7)
1a
d2guda1
A:1-121
1b
d2gudb1
B:1-121
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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