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2GTR
Asym. Unit
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Asym.Unit (136 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
HUMAN CHROMODOMAIN Y-LIKE PROTEIN
Authors
:
J. Min, H. Wu, T. Antoshenko, P. Loppnau, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (Sgc)
Date
:
28 Apr 06 (Deposition) - 09 May 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Chromodomain Y-Like Protein, Structural Genomics, Structural Genomics Consortium, Sgc, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Antoshenko, J. Min, H. Wu, P. Loppnau, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov
The Crystal Structure Of Human Chromodomain Y-Like Protein.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(5, 15)
Info
All Exons
Exon 1.11b (A:3-33 | B:4-33 | C:3-33)
Exon 1.12 (A:34-91 | B:34-91 | C:34-91)
Exon 1.13b (A:91-161 | B:91-161 | C:91-161)
Exon 1.14 (A:162-209 | B:162-209 | C:162-209)
Exon 1.15e (A:210-260 | B:210-261 | C:210-252)
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All Exon Boundaries
1: Boundary 1.9d/1.11b
2: Boundary 1.11b/1.12
3: Boundary 1.12/1.13b
4: Boundary 1.13b/1.14
5: Boundary 1.14/1.15e
6: Boundary 1.15e/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000328908
1b
ENSE00001241571
chr6:
4706393-4706485
93
CDYL1_HUMAN
-
0
0
-
-
1.2a
ENST00000328908
2a
ENSE00002154059
chr6:
4715975-4716115
141
CDYL1_HUMAN
1-35
35
0
-
-
1.4
ENST00000328908
4
ENSE00001979662
chr6:
4734996-4735078
83
CDYL1_HUMAN
35-62
28
0
-
-
1.9d
ENST00000328908
9d
ENSE00001979701
chr6:
4891947-4892613
667
CDYL1_HUMAN
63-285
223
0
-
-
1.11b
ENST00000328908
11b
ENSE00001972080
chr6:
4935749-4936005
257
CDYL1_HUMAN
285-370
86
3
A:3-33
B:4-33
C:3-33
31
30
31
1.12
ENST00000328908
12
ENSE00001991020
chr6:
4937799-4937971
173
CDYL1_HUMAN
371-428
58
3
A:34-91
B:34-91
C:34-91
58
58
58
1.13b
ENST00000328908
13b
ENSE00001960715
chr6:
4943780-4943990
211
CDYL1_HUMAN
428-498
71
3
A:91-161
B:91-161
C:91-161
71
71
71
1.14
ENST00000328908
14
ENSE00001962725
chr6:
4952500-4952643
144
CDYL1_HUMAN
499-546
48
3
A:162-209
B:162-209
C:162-209
48
48
48
1.15e
ENST00000328908
15e
ENSE00001930193
chr6:
4954132-4955781
1650
CDYL1_HUMAN
547-598
52
3
A:210-260
B:210-261
C:210-252
51
52
43
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2gtra_ (A:)
1b: SCOP_d2gtrb_ (B:)
1c: SCOP_d2gtrc_ (C:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Crotonase-like
(39)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2gtra_
A:
1b
d2gtrb_
B:
1c
d2gtrc_
C:
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (136 KB)
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