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2GTQ
Asym. Unit
Info
Asym.Unit (163 KB)
Biol.Unit 1 (155 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AMINOPEPTIDASE N FROM HUMAN PATHOGEN NEISSERIA MENINGITIDIS
Authors
:
B. Nocek, R. Mulligan, M. Bargassa, A. Joachimiak, Midwest Center Fo Structural Genomics (Mcsg)
Date
:
28 Apr 06 (Deposition) - 30 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alanine Aminopeptidase, Aminopeptidase N, M1 Family Peptidases, Mcsg, Psi-2, Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Nocek, R. Mulligan, M. Bargassa, F. Collart, A. Joachimiak
Crystal Structure Of Aminopeptidase N From Human Pathogen Neisseria Meningitidis.
Proteins V. 70 273 2007
[
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Hetero Components
(3, 35)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
16
Ligand/Ion
SULFATE ION
3
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:293 , HIS A:297 , GLU A:316 , HOH A:1411
BINDING SITE FOR RESIDUE ZN A 1001
02
AC2
SOFTWARE
ARG A:636 , HOH A:1031 , HOH A:1056 , HOH A:1678 , HOH A:1694
BINDING SITE FOR RESIDUE SO4 A 901
03
AC3
SOFTWARE
MSE A:469 , THR A:470 , ASP A:471 , HOH A:1002 , HOH A:1279 , HOH A:1412 , HOH A:1632 , HOH A:1698
BINDING SITE FOR RESIDUE SO4 A 902
04
AC4
SOFTWARE
ALA A:191 , VAL A:192 , ASN A:831 , LYS A:838 , LYS A:842 , HOH A:1020 , HOH A:1344 , HOH A:1629
BINDING SITE FOR RESIDUE SO4 A 903
05
AC5
SOFTWARE
ARG A:330 , HOH A:1726
BINDING SITE FOR RESIDUE SO4 A 904
06
AC6
SOFTWARE
LEU A:402 , ARG A:406
BINDING SITE FOR RESIDUE SO4 A 905
07
AC7
SOFTWARE
ALA A:492 , ARG A:499
BINDING SITE FOR RESIDUE SO4 A 906
08
AC8
SOFTWARE
GLY A:497 , ARG A:499
BINDING SITE FOR RESIDUE SO4 A 907
09
AC9
SOFTWARE
GLU A:521 , ALA A:522
BINDING SITE FOR RESIDUE SO4 A 908
10
BC1
SOFTWARE
THR A:565 , ARG A:568 , ARG A:569 , HOH A:1710
BINDING SITE FOR RESIDUE SO4 A 909
11
BC2
SOFTWARE
THR A:212 , ASP A:215 , HOH A:1105 , HOH A:1456 , HOH A:1651
BINDING SITE FOR RESIDUE SO4 A 910
12
BC3
SOFTWARE
ARG A:449 , LEU A:450
BINDING SITE FOR RESIDUE SO4 A 911
13
BC4
SOFTWARE
ALA A:331 , SER A:332 , HOH A:1246
BINDING SITE FOR RESIDUE SO4 A 912
14
BC5
SOFTWARE
ARG A:361 , HOH A:1420 , HOH A:1474 , HOH A:1539
BINDING SITE FOR RESIDUE SO4 A 913
15
BC6
SOFTWARE
SER A:773 , LEU A:774 , HOH A:1202
BINDING SITE FOR RESIDUE SO4 A 914
16
BC7
SOFTWARE
MSE A:256 , GLY A:257 , LYS A:270 , ARG A:781
BINDING SITE FOR RESIDUE SO4 A 915
17
BC8
SOFTWARE
TYR A:372
BINDING SITE FOR RESIDUE SO4 A 916
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d2gtqa4 (A:540-866)
2a: SCOP_d2gtqa3 (A:439-539)
3a: SCOP_d2gtqa1 (A:4-188)
4a: SCOP_d2gtqa2 (A:189-438)
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Classes
(
)
(
)
Folds
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(
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Superfamilies
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)
(
)
Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Aminopeptidase N (APN) C-terminal-like
(1)
Protein domain
:
Aminopeptidase N (APN) C-terminal domain
(1)
Neisseria meningitidis [TaxId: 122586]
(1)
1a
d2gtqa4
A:540-866
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Zn aminopeptidase insert domain
(10)
Family
:
Zn aminopeptidase insert domain
(4)
Protein domain
:
Aminopeptidase N (APN) domain 3
(1)
Neisseria meningitidis [TaxId: 122586]
(1)
2a
d2gtqa3
A:439-539
Fold
:
Zn aminopeptidase N-terminal domain
(55)
Superfamily
:
Zn aminopeptidase N-terminal domain
(55)
Family
:
Zn aminopeptidase N-terminal domain
(49)
Protein domain
:
Aminopeptidase N (APN) N-terminal domain
(1)
Neisseria meningitidis [TaxId: 122586]
(1)
3a
d2gtqa1
A:4-188
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Zn aminopeptidase catalytic domain
(49)
Protein domain
:
Aminopeptidase N (APN) catalytic domain
(1)
Neisseria meningitidis [TaxId: 122586]
(1)
4a
d2gtqa2
A:189-438
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2gtqA05 (A:541-867)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Zincin-like fold
(1)
Homologous Superfamily
:
Metalloproteases ('zincins'), catalytic domain
(1)
Neisseria meningitidis mc58. Organism_taxid: 122586. Strain: mc58.
(1)
1a
2gtqA05
A:541-867
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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