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2GSE
Asym. Unit
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Asym.Unit (316 KB)
Biol.Unit 1 (309 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN DIHYDROPYRIMIDINEASE-LIKE 2
Authors
:
D. Ogg, P. Stenmark, C. Arrowsmith, H. Berglund, R. Collins, A. Edwards, M. Ehn, S. Flodin, A. Flores, S. Graslund, B. M. Hallberg, M. Hammarstrom, T. Kotenyova, P. Kursula, P. Nilsson-Ehle, T. Nyman, C. Persson, J. Sagemark, M. Sundstrom, L. Holmberg-Schiavone, A. G Thorsell, J. Uppenberg, S. Van Den Berg, J. Weigelt, P. Nordlund, Structural Genomics Consortium (Sgc)
Date
:
26 Apr 06 (Deposition) - 09 May 06 (Release) - 28 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Alpha/Beta Barrel, Structural Genomics, Structural Genomics Consortium, Sgc, Dihydropyrimidinase-Related Protein 2, Drp2, Collapsin Response Mediator Protein 2, Crmp2, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Stenmark, D. Ogg, S. Flodin, A. Flores, T. Kotenyova, T. Nyman, P. Nordlund, P. Kursula
The Structure Of Human Collapsin Response Mediator Protein 2, A Regulator Of Axonal Growth.
J. Neurochem. V. 101 906 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:81 , THR A:349 , HOH A:1089 , HOH A:1202 , HOH A:1215
BINDING SITE FOR RESIDUE CA A 1000
2
AC2
SOFTWARE
THR B:349 , HOH B:1061 , HOH B:1099 , HOH B:1141 , HOH B:1175 , HOH B:1178
BINDING SITE FOR RESIDUE CA B 1001
3
AC3
SOFTWARE
THR C:349 , HOH C:1122 , HOH C:1206 , HOH C:1222
BINDING SITE FOR RESIDUE CA C 1002
4
AC4
SOFTWARE
THR D:349 , HOH D:1158 , HOH D:1215
BINDING SITE FOR RESIDUE CA D 1003
[
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]
SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_022016 (A118T, chain A/B/C/D, )
2: VAR_036316 (R481C, chain A/B/C/D, )
3: VAR_DPYL2_HUMAN_CCDS6051_1_01 (R481C, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022016
A
118
T
DPYL2_HUMAN
Polymorphism
2289593
A/B/C/D
A
118
T
2
UniProt
VAR_036316
R
481
C
DPYL2_HUMAN
Unclassified
---
A/B/C/D
R
481
C
3
CancerSNP
VAR_DPYL2_HUMAN_CCDS6051_1_01
*
R
481
C
DPYL2_HUMAN
Disease (Colorectal cancer)
---
A/B/C/D
R
481
C
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(12, 48)
Info
All Exons
Exon 1.5 (A:15-43 | B:15-43 | C:15-43 | D:15...)
Exon 1.6b (A:43-105 | B:43-105 | C:43-105 | D...)
Exon 1.8c (A:105-160 | B:105-160 | C:105-160 ...)
Exon 1.9 (A:160-180 | B:160-180 | C:160-180 ...)
Exon 1.10 (A:181-207 | B:181-207 | C:181-207 ...)
Exon 1.11 (A:208-230 | B:208-230 | C:208-230 ...)
Exon 1.12b (A:231-271 | B:231-271 | C:231-271 ...)
Exon 1.15b (A:271-323 | B:271-323 | C:271-323 ...)
Exon 1.16 (A:323-370 | B:323-370 | C:323-370 ...)
Exon 1.17 (A:371-427 | B:371-427 | C:371-427 ...)
Exon 1.18 (A:428-487 | B:428-487 | C:428-487 ...)
Exon 1.19 (A:488-489 | B:488-489 | C:488-489 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.3a/1.5
02: Boundary 1.5/1.6b
03: Boundary 1.6b/1.8c
04: Boundary 1.8c/1.9
05: Boundary 1.9/1.10
06: Boundary 1.10/1.11
07: Boundary 1.11/1.12b
08: Boundary 1.12b/1.15b
09: Boundary 1.15b/1.16
10: Boundary 1.16/1.17
11: Boundary 1.17/1.18
12: Boundary 1.18/1.19
13: Boundary 1.19/1.20d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000311151
3a
ENSE00002094501
chr8:
26435359-26435809
451
DPYL2_HUMAN
1-13
13
0
-
-
1.5
ENST00000311151
5
ENSE00001609028
chr8:
26439485-26439573
89
DPYL2_HUMAN
14-43
30
4
A:15-43
B:15-43
C:15-43
D:15-43
29
29
29
29
1.6b
ENST00000311151
6b
ENSE00002154917
chr8:
26441315-26441499
185
DPYL2_HUMAN
43-105
63
4
A:43-105
B:43-105
C:43-105
D:43-105
63
63
63
63
1.8c
ENST00000311151
8c
ENSE00001617914
chr8:
26481659-26481823
165
DPYL2_HUMAN
105-160
56
4
A:105-160
B:105-160
C:105-160
D:105-160
56
56
56
56
1.9
ENST00000311151
9
ENSE00001800343
chr8:
26484133-26484194
62
DPYL2_HUMAN
160-180
21
4
A:160-180
B:160-180
C:160-180
D:160-180
21
21
21
21
1.10
ENST00000311151
10
ENSE00001645950
chr8:
26484731-26484811
81
DPYL2_HUMAN
181-207
27
4
A:181-207
B:181-207
C:181-207
D:181-207
27
27
27
27
1.11
ENST00000311151
11
ENSE00001607585
chr8:
26485388-26485456
69
DPYL2_HUMAN
208-230
23
4
A:208-230
B:208-230
C:208-230
D:208-230
23
23
23
23
1.12b
ENST00000311151
12b
ENSE00001782190
chr8:
26492296-26492416
121
DPYL2_HUMAN
231-271
41
4
A:231-271
B:231-271
C:231-271
D:231-271
41
41
41
41
1.15b
ENST00000311151
15b
ENSE00001643130
chr8:
26500955-26501111
157
DPYL2_HUMAN
271-323
53
4
A:271-323
B:271-323
C:271-323
D:271-323
53
53
53
53
1.16
ENST00000311151
16
ENSE00001616779
chr8:
26501466-26501607
142
DPYL2_HUMAN
323-370
48
4
A:323-370
B:323-370
C:323-370
D:323-370
48
48
48
48
1.17
ENST00000311151
17
ENSE00001703598
chr8:
26505146-26505316
171
DPYL2_HUMAN
371-427
57
4
A:371-427
B:371-427
C:371-427
D:371-427
57
57
57
57
1.18
ENST00000311151
18
ENSE00001694723
chr8:
26509773-26509952
180
DPYL2_HUMAN
428-487
60
4
A:428-487
B:428-487
C:428-487
D:428-487
60
60
60
60
1.19
ENST00000311151
19
ENSE00001780215
chr8:
26510748-26510913
166
DPYL2_HUMAN
488-543
56
4
A:488-489
B:488-489
C:488-489
D:488-490
2
2
2
3
1.20d
ENST00000311151
20d
ENSE00001663120
chr8:
26513131-26515694
2564
DPYL2_HUMAN
543-572
30
0
-
-
[
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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