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2GRP
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RANGAP1-UBC9-Y87A
Authors
:
A. A. Yunus, C. D. Lima
Date
:
24 Apr 06 (Deposition) - 30 May 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ubiquitin, Conjugation, Small Ubiquitin Like Modifer, Smt3, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Yunus, C. D. Lima
Lysine Activation And Functional Analysis Of E2-Mediated Conjugation In The Sumo Pathway.
Nat. Struct. Mol. Biol. V. 13 491 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_CONJUGAT_2 (A:7-146)
2: UBIQUITIN_CONJUGAT_1 (A:82-97)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_CONJUGAT_2
PS50127
Ubiquitin-conjugating enzymes family profile.
UBC9_HUMAN
7-146
1
A:7-146
2
UBIQUITIN_CONJUGAT_1
PS00183
Ubiquitin-conjugating enzymes active site.
UBC9_HUMAN
82-97
1
A:82-97
[
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]
Exons
(11, 11)
Info
All Exons
Exon 1.16b (B:431-460)
Exon 1.17b (B:461-495)
Exon 1.18 (B:495-524)
Exon 1.19 (B:525-565)
Exon 1.20c (B:565-587)
Exon 2.4b (A:1-22)
Exon 2.5 (A:23-50)
Exon 2.6a (A:51-75)
Exon 2.7 (A:75-111)
Exon 2.8a (A:112-138)
Exon 2.9c (A:138-157)
View:
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All Exon Boundaries
01: Boundary 1.15/1.16b
02: Boundary 1.16b/1.17b
03: Boundary 1.17b/1.18
04: Boundary 1.18/1.19
05: Boundary 1.19/1.20c
06: Boundary 1.20c/-
07: Boundary 2.3c/2.4b
08: Boundary 2.4b/2.5
09: Boundary 2.5/2.6a
10: Boundary 2.6a/2.7
11: Boundary 2.7/2.8a
12: Boundary 2.8a/2.9c
13: Boundary 2.9c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000356244
3
ENSE00001525423
chr22:
41682255-41681990
266
RAGP1_HUMAN
-
0
0
-
-
1.6e
ENST00000356244
6e
ENSE00002184389
chr22:
41677086-41676937
150
RAGP1_HUMAN
1-38
38
0
-
-
1.7a
ENST00000356244
7a
ENSE00000655593
chr22:
41670731-41670604
128
RAGP1_HUMAN
38-80
43
0
-
-
1.8
ENST00000356244
8
ENSE00002178724
chr22:
41664160-41664101
60
RAGP1_HUMAN
81-100
20
0
-
-
1.9b
ENST00000356244
9b
ENSE00000655579
chr22:
41660847-41660668
180
RAGP1_HUMAN
101-160
60
0
-
-
1.10
ENST00000356244
10
ENSE00000655571
chr22:
41657584-41657450
135
RAGP1_HUMAN
161-205
45
0
-
-
1.11
ENST00000356244
11
ENSE00000655562
chr22:
41654110-41653952
159
RAGP1_HUMAN
206-258
53
0
-
-
1.12
ENST00000356244
12
ENSE00000655554
chr22:
41652828-41652715
114
RAGP1_HUMAN
259-296
38
0
-
-
1.13
ENST00000356244
13
ENSE00001388340
chr22:
41652294-41652195
100
RAGP1_HUMAN
297-330
34
0
-
-
1.14
ENST00000356244
14
ENSE00002167356
chr22:
41652109-41652025
85
RAGP1_HUMAN
330-358
29
0
-
-
1.15
ENST00000356244
15
ENSE00001615125
chr22:
41650498-41650312
187
RAGP1_HUMAN
358-420
63
0
-
-
1.16b
ENST00000356244
16b
ENSE00001786527
chr22:
41648995-41648876
120
RAGP1_HUMAN
421-460
40
1
B:431-460
30
1.17b
ENST00000356244
17b
ENSE00001635042
chr22:
41647113-41647011
103
RAGP1_HUMAN
461-495
35
1
B:461-495
35
1.18
ENST00000356244
18
ENSE00001708342
chr22:
41645821-41645733
89
RAGP1_HUMAN
495-524
30
1
B:495-524
30
1.19
ENST00000356244
19
ENSE00001792763
chr22:
41645455-41645334
122
RAGP1_HUMAN
525-565
41
1
B:525-565
41
1.20c
ENST00000356244
20c
ENSE00001563055
chr22:
41642676-41641615
1062
RAGP1_HUMAN
565-587
23
1
B:565-587
23
2.2b
ENST00000397515
2b
ENSE00001529011
chr16:
1359636-1359774
139
UBC9_HUMAN
-
0
0
-
-
2.3c
ENST00000397515
3c
ENSE00001529008
chr16:
1362348-1362604
257
UBC9_HUMAN
-
0
0
-
-
2.4b
ENST00000397515
4b
ENSE00002200477
chr16:
1364021-1364097
77
UBC9_HUMAN
1-22
22
1
A:1-22
22
2.5
ENST00000397515
5
ENSE00000665751
chr16:
1364294-1364377
84
UBC9_HUMAN
23-50
28
1
A:23-50
28
2.6a
ENST00000397515
6a
ENSE00000873575
chr16:
1365655-1365727
73
UBC9_HUMAN
51-75
25
1
A:51-75
25
2.7
ENST00000397515
7
ENSE00000873577
chr16:
1370175-1370284
110
UBC9_HUMAN
75-111
37
1
A:75-111
37
2.8a
ENST00000397515
8a
ENSE00001287298
chr16:
1370439-1370518
80
UBC9_HUMAN
112-138
27
1
A:112-138
27
2.9c
ENST00000397515
9c
ENSE00001287274
chr16:
1374731-1377019
2289
UBC9_HUMAN
138-158
21
1
A:138-157
20
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2grpb_ (B:)
2a: SCOP_d2grpa_ (A:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
(13)
Family
:
Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
(13)
Protein domain
:
Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
(10)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2grpb_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
UBC-related
(135)
Protein domain
:
Ubiquitin conjugating enzyme, UBC
(84)
Human (Homo sapiens), ubc9 [TaxId: 9606]
(20)
2a
d2grpa_
A:
[
close SCOP info
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2grpA00 (A:1-157)
2a: CATH_2grpB00 (B:431-587)
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(
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(
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin Conjugating Enzyme
(83)
Homologous Superfamily
:
Ubiquitin Conjugating Enzyme
(83)
Human (Homo sapiens)
(49)
1a
2grpA00
A:1-157
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.200, no name defined]
(8)
Human (Homo sapiens)
(8)
2a
2grpB00
B:431-587
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Pfam Domains
(0, 0)
Info
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