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2GRE
Biol. Unit 1
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Asym.Unit (819 KB)
Biol.Unit 1 (600 KB)
Biol.Unit 2 (598 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DEBLOCKING AMINOPEPTIDASE FROM BACILLUS CEREUS
Authors
:
C. Chang, R. Wu, J. Abdullah, A. Joachimiak, Midwest Center For Stru Genomics (Mcsg)
Date
:
24 Apr 06 (Deposition) - 23 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: M,N,O,P (3x)
Keywords
:
Bacillus Cereus Deblocking Aminopeptidase, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Chang, R. Wu, J. Abdullah, A. Joachimiak
Crystal Structure Of Deblocking Aminopeptidase From Bacillu Cereus
To Be Published
[
close entry info
]
Hetero Components
(2, 84)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1ak: SELENOMETHIONINE (MSEak)
1al: SELENOMETHIONINE (MSEal)
1am: SELENOMETHIONINE (MSEam)
1an: SELENOMETHIONINE (MSEan)
1ao: SELENOMETHIONINE (MSEao)
1ap: SELENOMETHIONINE (MSEap)
1aq: SELENOMETHIONINE (MSEaq)
1ar: SELENOMETHIONINE (MSEar)
1as: SELENOMETHIONINE (MSEas)
1at: SELENOMETHIONINE (MSEat)
1au: SELENOMETHIONINE (MSEau)
1av: SELENOMETHIONINE (MSEav)
1aw: SELENOMETHIONINE (MSEaw)
1ax: SELENOMETHIONINE (MSEax)
1ay: SELENOMETHIONINE (MSEay)
1az: SELENOMETHIONINE (MSEaz)
1b: SELENOMETHIONINE (MSEb)
1ba: SELENOMETHIONINE (MSEba)
1bb: SELENOMETHIONINE (MSEbb)
1bc: SELENOMETHIONINE (MSEbc)
1bd: SELENOMETHIONINE (MSEbd)
1be: SELENOMETHIONINE (MSEbe)
1bf: SELENOMETHIONINE (MSEbf)
1bg: SELENOMETHIONINE (MSEbg)
1bh: SELENOMETHIONINE (MSEbh)
1bi: SELENOMETHIONINE (MSEbi)
1bj: SELENOMETHIONINE (MSEbj)
1bk: SELENOMETHIONINE (MSEbk)
1bl: SELENOMETHIONINE (MSEbl)
1bm: SELENOMETHIONINE (MSEbm)
1bn: SELENOMETHIONINE (MSEbn)
1bo: SELENOMETHIONINE (MSEbo)
1bp: SELENOMETHIONINE (MSEbp)
1bq: SELENOMETHIONINE (MSEbq)
1br: SELENOMETHIONINE (MSEbr)
1bs: SELENOMETHIONINE (MSEbs)
1bt: SELENOMETHIONINE (MSEbt)
1bu: SELENOMETHIONINE (MSEbu)
1bv: SELENOMETHIONINE (MSEbv)
1bw: SELENOMETHIONINE (MSEbw)
1bx: SELENOMETHIONINE (MSEbx)
1by: SELENOMETHIONINE (MSEby)
1bz: SELENOMETHIONINE (MSEbz)
1c: SELENOMETHIONINE (MSEc)
1ca: SELENOMETHIONINE (MSEca)
1cb: SELENOMETHIONINE (MSEcb)
1cc: SELENOMETHIONINE (MSEcc)
1cd: SELENOMETHIONINE (MSEcd)
1ce: SELENOMETHIONINE (MSEce)
1cf: SELENOMETHIONINE (MSEcf)
1cg: SELENOMETHIONINE (MSEcg)
1ch: SELENOMETHIONINE (MSEch)
1ci: SELENOMETHIONINE (MSEci)
1cj: SELENOMETHIONINE (MSEcj)
1ck: SELENOMETHIONINE (MSEck)
1cl: SELENOMETHIONINE (MSEcl)
1cm: SELENOMETHIONINE (MSEcm)
1cn: SELENOMETHIONINE (MSEcn)
1co: SELENOMETHIONINE (MSEco)
1cp: SELENOMETHIONINE (MSEcp)
1cq: SELENOMETHIONINE (MSEcq)
1cr: SELENOMETHIONINE (MSEcr)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
72
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
12
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:274 , SER A:344 , ASN A:345
BINDING SITE FOR RESIDUE SO4 A 350
02
AC2
SOFTWARE
HIS B:274 , SER B:344 , ASN B:345
BINDING SITE FOR RESIDUE SO4 B 350
03
AC3
SOFTWARE
HIS G:274 , SER G:344 , ASN G:345 , HOH G:365 , THR O:5 , GLU O:7
BINDING SITE FOR RESIDUE SO4 G 350
04
AC4
SOFTWARE
HIS H:274 , LEU H:278 , SER H:344 , ASN H:345
BINDING SITE FOR RESIDUE SO4 H 350
05
AC5
SOFTWARE
HIS I:274 , SER I:344 , ASN I:345 , HOH I:383
BINDING SITE FOR RESIDUE SO4 I 350
06
AC6
SOFTWARE
HIS J:274 , SER J:344 , ASN J:345 , HIS L:3 , HIS L:4
BINDING SITE FOR RESIDUE SO4 J 350
07
AC7
SOFTWARE
HIS K:274 , SER K:344 , ASN K:345
BINDING SITE FOR RESIDUE SO4 K 350
08
AC8
SOFTWARE
HIS L:274 , SER L:344 , ASN L:345 , HOH L:383
BINDING SITE FOR RESIDUE SO4 L 350
09
AC9
SOFTWARE
HIS D:274 , SER D:344 , ASN D:345
BINDING SITE FOR RESIDUE SO4 D 350
10
BC1
SOFTWARE
HIS E:274 , SER E:344 , ASN E:345 , HIS I:4
BINDING SITE FOR RESIDUE SO4 E 350
11
BC2
SOFTWARE
HIS F:274 , LEU F:278 , SER F:344 , ASN F:345 , HOH F:382
BINDING SITE FOR RESIDUE SO4 F 350
12
BC3
SOFTWARE
HIS D:4 , GLU D:7 , HIS M:274 , SER M:344 , ASN M:345 , HOH M:384
BINDING SITE FOR RESIDUE SO4 M 350
13
BC7
SOFTWARE
HIS C:274 , SER C:344 , ASN C:345
BINDING SITE FOR RESIDUE SO4 C 350
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 32)
Info
All SCOP Domains
1a: SCOP_d2grea1 (A:74-186)
1b: SCOP_d2greb1 (B:74-186)
1c: SCOP_d2grek1 (K:74-186)
1d: SCOP_d2grel1 (L:74-186)
1e: SCOP_d2grem1 (M:74-186)
1f: SCOP_d2gren1 (N:74-186)
1g: SCOP_d2greo1 (O:74-186)
1h: SCOP_d2grep1 (P:74-186)
1i: SCOP_d2grec1 (C:74-186)
1j: SCOP_d2gred1 (D:74-186)
1k: SCOP_d2gree1 (E:74-186)
1l: SCOP_d2gref1 (F:74-186)
1m: SCOP_d2greg1 (G:74-186)
1n: SCOP_d2greh1 (H:74-186)
1o: SCOP_d2grei1 (I:74-186)
1p: SCOP_d2grej1 (J:74-186)
2a: SCOP_d2grea2 (A:3-73,A:187-348)
2b: SCOP_d2greb2 (B:3-73,B:187-348)
2c: SCOP_d2grek2 (K:3-73,K:187-348)
2d: SCOP_d2grel2 (L:3-73,L:187-348)
2e: SCOP_d2grem2 (M:2-73,M:187-348)
2f: SCOP_d2gren2 (N:3-73,N:187-348)
2g: SCOP_d2greo2 (O:5-73,O:187-348)
2h: SCOP_d2grep2 (P:3-73,P:187-348)
2i: SCOP_d2grec2 (C:3-73,C:187-348)
2j: SCOP_d2gred2 (D:4-73,D:187-348)
2k: SCOP_d2gree2 (E:2-73,E:187-348)
2l: SCOP_d2gref2 (F:3-73,F:187-348)
2m: SCOP_d2greg2 (G:4-73,G:187-348)
2n: SCOP_d2greh2 (H:3-73,H:187-348)
2o: SCOP_d2grei2 (I:4-73,I:187-348)
2p: SCOP_d2grej2 (J:3-73,J:187-348)
View:
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Classes
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)
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)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Domain of alpha and beta subunits of F1 ATP synthase-like
(89)
Superfamily
:
Aminopeptidase/glucanase lid domain
(9)
Family
:
Aminopeptidase/glucanase lid domain
(9)
Protein domain
:
Deblocking aminopeptidase YhfE
(1)
Bacillus cereus [TaxId: 1396]
(1)
1a
d2grea1
A:74-186
1b
d2greb1
B:74-186
1c
d2grek1
K:74-186
1d
d2grel1
L:74-186
1e
d2grem1
M:74-186
1f
d2gren1
N:74-186
1g
d2greo1
O:74-186
1h
d2grep1
P:74-186
1i
d2grec1
C:74-186
1j
d2gred1
D:74-186
1k
d2gree1
E:74-186
1l
d2gref1
F:74-186
1m
d2greg1
G:74-186
1n
d2greh1
H:74-186
1o
d2grei1
I:74-186
1p
d2grej1
J:74-186
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Bacterial dinuclear zinc exopeptidases
(55)
Protein domain
:
Deblocking aminopeptidase YhfE
(1)
Bacillus cereus [TaxId: 1396]
(1)
2a
d2grea2
A:3-73,A:187-348
2b
d2greb2
B:3-73,B:187-348
2c
d2grek2
K:3-73,K:187-348
2d
d2grel2
L:3-73,L:187-348
2e
d2grem2
M:2-73,M:187-348
2f
d2gren2
N:3-73,N:187-348
2g
d2greo2
O:5-73,O:187-348
2h
d2grep2
P:3-73,P:187-348
2i
d2grec2
C:3-73,C:187-348
2j
d2gred2
D:4-73,D:187-348
2k
d2gree2
E:2-73,E:187-348
2l
d2gref2
F:3-73,F:187-348
2m
d2greg2
G:4-73,G:187-348
2n
d2greh2
H:3-73,H:187-348
2o
d2grei2
I:4-73,I:187-348
2p
d2grej2
J:3-73,J:187-348
[
close SCOP info
]
CATH Domains
(2, 32)
Info
all CATH domains
1a: CATH_2greA01 (A:3-73,A:170-348)
1b: CATH_2greB01 (B:3-73,B:170-348)
1c: CATH_2greD01 (D:4-73,D:170-348)
1d: CATH_2greJ01 (J:3-73,J:170-348)
1e: CATH_2greP01 (P:3-73,P:170-348)
1f: CATH_2greH01 (H:3-73,H:170-348)
1g: CATH_2greK01 (K:3-73,K:170-348)
1h: CATH_2greI01 (I:4-73,I:170-348)
1i: CATH_2greM01 (M:2-73,M:170-348)
1j: CATH_2greC01 (C:3-73,C:170-348)
1k: CATH_2greF01 (F:3-73,F:170-348)
1l: CATH_2greL01 (L:3-73,L:170-348)
1m: CATH_2greG01 (G:4-73,G:170-348)
1n: CATH_2greN01 (N:3-73,N:170-348)
1o: CATH_2greO01 (O:5-73,O:170-348)
1p: CATH_2greE01 (E:2-73,E:170-348)
2a: CATH_2greF02 (F:74-169)
2b: CATH_2greG02 (G:74-169)
2c: CATH_2greC02 (C:74-169)
2d: CATH_2greE02 (E:74-169)
2e: CATH_2greI02 (I:74-169)
2f: CATH_2greM02 (M:74-169)
2g: CATH_2greN02 (N:74-169)
2h: CATH_2greP02 (P:74-169)
2i: CATH_2greJ02 (J:74-169)
2j: CATH_2greL02 (L:74-169)
2k: CATH_2greA02 (A:74-169)
2l: CATH_2greD02 (D:74-169)
2m: CATH_2greH02 (H:74-169)
2n: CATH_2greK02 (K:74-169)
2o: CATH_2greO02 (O:74-169)
2p: CATH_2greB02 (B:74-169)
View:
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Bacillus cereus. Organism_taxid: 1396.
(1)
1a
2greA01
A:3-73,A:170-348
1b
2greB01
B:3-73,B:170-348
1c
2greD01
D:4-73,D:170-348
1d
2greJ01
J:3-73,J:170-348
1e
2greP01
P:3-73,P:170-348
1f
2greH01
H:3-73,H:170-348
1g
2greK01
K:3-73,K:170-348
1h
2greI01
I:4-73,I:170-348
1i
2greM01
M:2-73,M:170-348
1j
2greC01
C:3-73,C:170-348
1k
2greF01
F:3-73,F:170-348
1l
2greL01
L:3-73,L:170-348
1m
2greG01
G:4-73,G:170-348
1n
2greN01
N:3-73,N:170-348
1o
2greO01
O:5-73,O:170-348
1p
2greE01
E:2-73,E:170-348
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Aminopeptidase/glucanase lid domain; domain 2
(14)
Bacillus cereus. Organism_taxid: 1396.
(1)
2a
2greF02
F:74-169
2b
2greG02
G:74-169
2c
2greC02
C:74-169
2d
2greE02
E:74-169
2e
2greI02
I:74-169
2f
2greM02
M:74-169
2g
2greN02
N:74-169
2h
2greP02
P:74-169
2i
2greJ02
J:74-169
2j
2greL02
L:74-169
2k
2greA02
A:74-169
2l
2greD02
D:74-169
2m
2greH02
H:74-169
2n
2greK02
K:74-169
2o
2greO02
O:74-169
2p
2greB02
B:74-169
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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