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Biol. Unit 1
Info
Asym.Unit (78 KB)
Biol.Unit 1 (140 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (OXIDIZED FORM)
Authors
:
T. Senda, M. Senda
Date
:
22 Apr 06 (Deposition) - 22 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Flavoprotein, Oxidoreductase
(Keyword Search:
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)
Reference
:
M. Senda, S. Kishigami, S. Kimura, M. Fukuda, T. Ishida, T. Senda
Molecular Mechanism Of The Redox-Dependent Interaction Between Nadh-Dependent Ferredoxin Reductase And Rieske-Type [2Fe-2S] Ferredoxin
J. Mol. Biol. V. 373 382 2007
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
3a: GLYCEROL (GOLa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
FMT
10
Ligand/Ion
FORMIC ACID
3
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:14 , GLY A:16 , LEU A:17 , ALA A:18 , VAL A:38 , ASP A:40 , GLU A:41 , ARG A:48 , PRO A:49 , SER A:52 , LYS A:53 , VAL A:80 , ALA A:82 , ALA A:108 , THR A:109 , GLY A:110 , ARG A:130 , ILE A:156 , GLY A:272 , ASP A:273 , GLU A:289 , THR A:290 , TRP A:291 , ALA A:294 , TYR A:319 , TRP A:320 , HOH A:2006 , HOH A:2007 , HOH A:2008 , HOH A:2012 , HOH A:2015 , HOH A:2030 , HOH A:2035 , HOH A:2043 , HOH A:2045 , HOH A:2103
BINDING SITE FOR RESIDUE FAD A 1449
2
AC2
SOFTWARE
PRO A:113 , THR A:128 , LEU A:129 , VAL A:233 , GLY A:234 , ILE A:235 , GLY A:236 , HOH A:2119 , HOH A:2352
BINDING SITE FOR RESIDUE GOL A 1001
3
AC3
SOFTWARE
ASP A:54 , HIS A:58 , GLY A:59 , ASP A:60 , ASP A:215
BINDING SITE FOR RESIDUE FMT A 2001
4
AC4
SOFTWARE
ALA A:122 , THR A:123 , MET A:124 , SER A:213 , VAL A:214 , ASP A:215 , GLY A:216
BINDING SITE FOR RESIDUE FMT A 2002
5
AC5
SOFTWARE
ARG A:327 , ASN A:369 , ASN A:370 , ALA A:371 , HOH A:2193 , HOH A:2225 , HOH A:2327
BINDING SITE FOR RESIDUE FMT A 2003
6
AC6
SOFTWARE
VAL A:217 , ARG A:225 , TRP A:320 , HOH A:2085 , HOH A:2173 , HOH A:2420
BINDING SITE FOR RESIDUE FMT A 2004
7
AC7
SOFTWARE
ALA A:115 , LEU A:116 , HOH A:2207 , HOH A:2220
BINDING SITE FOR RESIDUE FMT A 2005
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2gqwa3 (A:309-406)
2a: SCOP_d2gqwa1 (A:6-115,A:237-308)
2b: SCOP_d2gqwa2 (A:116-236)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
NADH-dependent ferredoxin reductase, BphA4
(9)
Pseudomonas sp., KKS102 [TaxId: 306]
(9)
1a
d2gqwa3
A:309-406
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
NADH-dependent ferredoxin reductase, BphA4
(9)
Pseudomonas sp., KKS102 [TaxId: 306]
(9)
2a
d2gqwa1
A:6-115,A:237-308
2b
d2gqwa2
A:116-236
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2gqwA03 (A:318-406)
2a: CATH_2gqwA01 (A:6-110,A:239-317)
2b: CATH_2gqwA02 (A:114-236)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Kks102 (Pseudomonas sp)
(7)
1a
2gqwA03
A:318-406
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Kks102 (Pseudomonas sp)
(7)
2a
2gqwA01
A:6-110,A:239-317
2b
2gqwA02
A:114-236
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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