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2GQM
Asym. Unit
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Asym.Unit (1.5 MB)
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Models
(30 )
Title
:
SOLUTION STRUCTURE OF HUMAN CU(I)-SCO1
Authors
:
L. Banci, I. Bertini, V. Calderone, S. Ciofi-Baffoni, S. Mangani, P. Palumaa, M. Martinelli, S. Wang, Structural Proteomics In Europe (Spine)
Date
:
21 Apr 06 (Deposition) - 06 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (30 x)
Keywords
:
Thioredoxin-Like Fold, Metalloprotein, Structural Genomics, Structural Proteomics In Europe, Spine, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Banci, I. Bertini, V. Calderone, S. Ciofi-Baffoni, S. Mangani, M. Martinelli, P. Palumaa, S. Wang
A Hint For The Function Of Human Sco1 From Different Structures.
Proc. Natl. Acad. Sci. Usa V. 103 8595 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: COPPER (I) ION (CU1a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU1
1
Ligand/Ion
COPPER (I) ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:166 , CYS A:169 , CYS A:173 , HIS A:260
BINDING SITE FOR RESIDUE CU1 A 302
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_012109 (P174L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_012109
P
174
L
SCO1_HUMAN
Disease (MT-C4D)
---
A
P
174
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
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Exons
(4, 4)
Info
All Exons
Exon 1.3b (A:129-188)
Exon 1.4 (A:188-219)
Exon 1.5 (A:219-257)
Exon 1.6b (A:258-301)
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All Exon Boundaries
1: Boundary 1.2/1.3b
2: Boundary 1.3b/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6b
5: Boundary 1.6b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000255390
1a
ENSE00001523689
chr17:
10600885-10600552
334
SCO1_HUMAN
1-91
91
0
-
-
1.2
ENST00000255390
2
ENSE00000907744
chr17:
10599148-10599058
91
SCO1_HUMAN
92-122
31
0
-
-
1.3b
ENST00000255390
3b
ENSE00000907743
chr17:
10596278-10596081
198
SCO1_HUMAN
122-188
67
1
A:129-188
60
1.4
ENST00000255390
4
ENSE00000907742
chr17:
10595281-10595189
93
SCO1_HUMAN
188-219
32
1
A:188-219
32
1.5
ENST00000255390
5
ENSE00000907741
chr17:
10590159-10590044
116
SCO1_HUMAN
219-257
39
1
A:219-257
39
1.6b
ENST00000255390
6b
ENSE00001830664
chr17:
10584570-10583654
917
SCO1_HUMAN
258-301
44
1
A:258-301
44
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2gqma_ (A:)
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Classes
(
)
(
)
Folds
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)
(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
1a
d2gqma_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2gqmA00 (A:129-301)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
2gqmA00
A:129-301
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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