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2GQ3
Asym. Unit
Info
Asym.Unit (243 KB)
Biol.Unit 1 (124 KB)
Biol.Unit 2 (116 KB)
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(1)
Title
:
MYCOBACTERIUM TUBERCULOSIS MALATE SYNTHASE IN COMPLEX WITH MAGNESIUM, MALATE, AND COENZYME A
Authors
:
D. M. Anstrom, S. J. Remington
Date
:
19 Apr 06 (Deposition) - 15 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Tim Barrel, Coenzyme A, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
D. M. Anstrom, S. J. Remington
The Product Complex Of M. Tuberculosis Malate Synthase Revisited.
Protein Sci. V. 15 2002 2006
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: COENZYME A (COAa)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: MALATE ION (MLTa)
4b: MALATE ION (MLTb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
COA
1
Ligand/Ion
COENZYME A
2
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
MG
4
Ligand/Ion
MAGNESIUM ION
4
MLT
2
Ligand/Ion
MALATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:434 , ASP A:462 , MLT A:900 , HOH A:2651 , HOH A:2652
BINDING SITE FOR RESIDUE MG A 1000
2
AC2
SOFTWARE
GLU B:434 , ASP B:462 , MLT B:901 , HOH B:2653 , HOH B:2654
BINDING SITE FOR RESIDUE MG B 1001
3
AC3
SOFTWARE
HIS A:374 , LYS A:377 , ASN A:382 , GLY A:383 , LEU A:385 , HOH A:2801
BINDING SITE FOR RESIDUE MG A 1002
4
AC4
SOFTWARE
ASN B:295 , HIS B:374 , LYS B:377 , ASN B:382 , GLY B:383 , LEU B:385 , HOH B:2802
BINDING SITE FOR RESIDUE MG B 1003
5
AC5
SOFTWARE
ARG A:339 , GLU A:434 , GLY A:459 , PHE A:460 , LEU A:461 , ASP A:462 , TRP A:541 , ASP A:633 , COA A:800 , MG A:1000 , HOH A:2035 , HOH A:2651
BINDING SITE FOR RESIDUE MLT A 900
6
AC6
SOFTWARE
ARG B:339 , GLU B:434 , GLY B:459 , PHE B:460 , LEU B:461 , ASP B:462 , TRP B:541 , ASP B:633 , MG B:1001 , HOH B:2554 , HOH B:2653 , HOH B:2654
BINDING SITE FOR RESIDUE MLT B 901
7
AC7
SOFTWARE
VAL A:118 , VAL A:119 , ARG A:125 , PHE A:126 , ASN A:129 , ALA A:130 , LYS A:305 , ARG A:312 , PRO A:543 , PRO A:545 , CYS A:619 , LYS A:621 , MET A:631 , ASP A:633 , MLT A:900 , HOH A:2800
BINDING SITE FOR RESIDUE COA A 800
8
AC8
SOFTWARE
LEU A:122 , ASN A:123 , ASP A:283 , LEU A:286 , GLN A:615 , GLY A:616 , ARG A:718 , HOH A:2040 , HOH A:2069 , HOH A:2760
BINDING SITE FOR RESIDUE EPE A 5000
9
AC9
SOFTWARE
LEU B:122 , ASN B:123 , GLN B:615 , GLY B:616 , ARG B:718 , HOH B:2483
BINDING SITE FOR RESIDUE EPE B 6000
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2gq3a_ (A:)
1b: SCOP_d2gq3b_ (B:)
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Classes
(
)
(
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)
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Malate synthase G
(13)
Family
:
Malate synthase G
(13)
Protein domain
:
Malate synthase G
(7)
Mycobacterium tuberculosis [TaxId: 1773]
(3)
1a
d2gq3a_
A:
1b
d2gq3b_
B:
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_2gq3A02 (A:89-134,A:264-296,A:335-590)
1b: CATH_2gq3B02 (B:89-134,B:264-296,B:335-590)
2a: CATH_2gq3A01 (A:3-88)
2b: CATH_2gq3B01 (B:3-88)
3a: CATH_2gq3A04 (A:591-702)
3b: CATH_2gq3B04 (B:591-702)
4a: CATH_2gq3B03 (B:135-263,B:297-334)
4b: CATH_2gq3A03 (A:135-263,A:297-334)
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)
(
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Malate synthase, domain 3
(6)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(3)
1a
2gq3A02
A:89-134,A:264-296,A:335-590
1b
2gq3B02
B:89-134,B:264-296,B:335-590
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
N-terminal alpha-helical clasp
(6)
Homologous Superfamily
:
N-terminal alpha-helical clasp
(6)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(3)
2a
2gq3A01
A:3-88
2b
2gq3B01
B:3-88
Architecture
:
Up-down Bundle
(3216)
Topology
:
Malate Synthase G; Chain: A; Domain 4
(6)
Homologous Superfamily
:
[code=1.20.1220.12, no name defined]
(6)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(3)
3a
2gq3A04
A:591-702
3b
2gq3B04
B:591-702
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
Malate synthase G - maily-beta sub-domain
(6)
Homologous Superfamily
:
Malate synthase G - maily-beta sub-domain
(6)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(3)
4a
2gq3B03
B:135-263,B:297-334
4b
2gq3A03
A:135-263,A:297-334
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (243 KB)
Header - Asym.Unit
Biol.Unit 1 (124 KB)
Header - Biol.Unit 1
Biol.Unit 2 (116 KB)
Header - Biol.Unit 2
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