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2GON
Biol. Unit 1
Info
Asym.Unit (187 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (46 KB)
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(1)
Title
:
XRAY STRUCTURE OF GAG133-278
Authors
:
B. N. Kelly
Date
:
13 Apr 06 (Deposition) - 26 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hiv-1 Ca, Capsid, Beta Hairpin, Gag, Immature, Mature, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. N. Kelly, B. R. Howard, H. Wang, H. Robinson, W. I. Sundquist, C. P. Hill
Implications For Viral Capsid Assembly From Crystal Structures Of Hiv-1 Gag 1-278 And Can 133-278.
Biochemistry V. 45 11257 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
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No.
Name
Count
Type
Full Name
1
FLC
1
Ligand/Ion
CITRATE ANION
2
MSE
7
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:212 , LEU A:215 , HIS A:216 , HOH A:281 , HOH A:282 , HOH A:288 , HOH A:289 , GLU B:208 , GLU B:211 , TRP B:212 , HIS B:216 , ARG B:264 , TRP B:265
BINDING SITE FOR RESIDUE FLC A 279
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2gona_ (A:)
1b: SCOP_d2gonb_ (B:)
1c: SCOP_d2gonc_ (C:)
1d: SCOP_d2gond_ (D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Retrovirus capsid protein, N-terminal core domain
(53)
Superfamily
:
Retrovirus capsid protein, N-terminal core domain
(53)
Family
:
Retrovirus capsid protein, N-terminal core domain
(51)
Protein domain
:
HIV-1 capsid protein
(28)
Human immunodeficiency virus type 1 [TaxId: 11676]
(28)
1a
d2gona_
A:
1b
d2gonb_
B:
1c
d2gonc_
C:
1d
d2gond_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2gonC00 (C:133-278)
1b: CATH_2gonB00 (B:143-278)
1c: CATH_2gonD00 (D:145-278)
1d: CATH_2gonA00 (A:144-278)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Human Immunodeficiency Virus Type 1 Capsid Protein
(30)
Homologous Superfamily
:
Human Immunodeficiency Virus Type 1 Capsid Protein
(30)
Human immunodeficiency virus 1. Organism_taxid: 11676. Strain: isolatenew york-5.
(2)
1a
2gonC00
C:133-278
1b
2gonB00
B:143-278
1c
2gonD00
D:145-278
1d
2gonA00
A:144-278
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (187 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Biol.Unit 2 (48 KB)
Header - Biol.Unit 2
Biol.Unit 3 (48 KB)
Header - Biol.Unit 3
Biol.Unit 4 (46 KB)
Header - Biol.Unit 4
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