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2GMR
Asym. Unit
Info
Asym.Unit (158 KB)
Biol.Unit 1 (148 KB)
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(1)
Title
:
PHOTOSYNTHETIC REACTION CENTER MUTANT FROM RHODOBACTER SPHAEROIDES WITH ASP L210 REPLACED WITH ASN
Authors
:
J. M. Stachnik, S. Hermes, K Gerwert, E. Hofmann
Date
:
07 Apr 06 (Deposition) - 21 Nov 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : H,L,M
Biol. Unit 1: H,L,M (1x)
Keywords
:
Photosynthetic Reaction Center, Integral Membrane Protein, Electron Transport, Proton Transfer, L210Dn, Mutant, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Hermes, J. M. Stachnik, D. Onidas, A. Remy, E. Hofmann, K. Gerwert
Proton Uptake In The Reaction Center Mutant L210Dn From Rhodobacter Sphaeroides Via Protonated Water Molecules.
Biochemistry V. 45 13741 2006
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Hetero Components
(6, 14)
Info
All Hetero Components
1a: BACTERIOCHLOROPHYLL A (BCLa)
1b: BACTERIOCHLOROPHYLL A (BCLb)
1c: BACTERIOCHLOROPHYLL A (BCLc)
1d: BACTERIOCHLOROPHYLL A (BCLd)
2a: BACTERIOPHEOPHYTIN A (BPHa)
2b: BACTERIOPHEOPHYTIN A (BPHb)
3a: FE (II) ION (FE2a)
4a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
4b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
4c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
4d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
5a: SPEROIDENONE (SPNa)
6a: UBIQUINONE-10 (U10a)
6b: UBIQUINONE-10 (U10b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
4
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
2
Ligand/Ion
BACTERIOPHEOPHYTIN A
3
FE2
1
Ligand/Ion
FE (II) ION
4
LDA
4
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
5
SPN
1
Ligand/Ion
SPEROIDENONE
6
U10
2
Ligand/Ion
UBIQUINONE-10
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266
BINDING SITE FOR RESIDUE FE2 M 308
02
AC2
SOFTWARE
HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , LEU L:185 , BCL L:302 , HOH L:330 , TRP M:66 , ILE M:179 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:309 , BPH M:310 , SPN M:312
BINDING SITE FOR RESIDUE BCL L 301
03
AC3
SOFTWARE
PHE L:97 , ALA L:124 , ILE L:125 , ALA L:127 , LEU L:131 , VAL L:157 , THR L:160 , TYR L:162 , ASN L:166 , PHE L:167 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , PHE L:180 , SER L:244 , ALA L:245 , CYS L:247 , MET L:248 , BCL L:301 , BCL L:304 , BPH L:305 , TYR M:210 , BCL M:309
BINDING SITE FOR RESIDUE BCL L 302
04
AC4
SOFTWARE
VAL L:157 , TYR L:162 , PHE L:181 , BCL L:301 , BCL L:302 , ALA M:153 , LEU M:156 , TRP M:157 , LEU M:160 , THR M:186 , ASN M:187 , PHE M:189 , SER M:190 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , TYR M:210 , GLY M:280 , ILE M:284 , BPH M:310
BINDING SITE FOR RESIDUE BCL M 309
05
AC5
SOFTWARE
TYR L:128 , LEU L:131 , PHE L:146 , ILE L:150 , HIS L:153 , LEU L:154 , BCL L:302 , BPH L:305 , PHE M:197 , GLY M:203 , ILE M:206 , ALA M:207 , TYR M:210 , LDA M:313 , HOH M:327
BINDING SITE FOR RESIDUE BCL L 304
06
AC6
SOFTWARE
PHE L:181 , LEU L:185 , LEU L:189 , BCL L:301 , LEU M:60 , GLY M:63 , PHE M:68 , VAL M:126 , TRP M:129 , THR M:146 , ALA M:149 , PHE M:150 , ALA M:153 , ALA M:273 , THR M:277 , BCL M:309 , SPN M:312
BINDING SITE FOR RESIDUE BPH M 310
07
AC7
SOFTWARE
PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , ALA L:120 , PHE L:121 , ALA L:124 , TYR L:128 , PHE L:146 , TYR L:148 , GLY L:149 , VAL L:241 , BCL L:302 , BCL L:304 , TYR M:210 , ALA M:213 , LEU M:214 , TRP M:252 , MET M:256 , U10 M:311
BINDING SITE FOR RESIDUE BPH L 305
08
AC8
SOFTWARE
GLY L:35 , THR L:38 , PHE L:39 , BPH L:305 , MET M:218 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , MET M:256 , ASN M:259 , ALA M:260 , ILE M:265 , TRP M:268 , MET M:272 , LDA M:314
BINDING SITE FOR RESIDUE U10 M 311
09
AC9
SOFTWARE
SER L:178 , PHE L:179 , LEU L:189 , HIS L:190 , LEU L:193 , PHE L:216 , SER L:223 , ILE L:224 , HOH L:322
BINDING SITE FOR RESIDUE U10 L 306
10
BC1
SOFTWARE
BCL L:301 , PHE M:67 , PHE M:68 , ILE M:70 , GLY M:71 , TRP M:75 , SER M:119 , PHE M:120 , MET M:122 , TRP M:157 , PHE M:162 , TYR M:177 , ILE M:179 , HIS M:182 , BPH M:310
BINDING SITE FOR RESIDUE SPN M 312
11
BC2
SOFTWARE
BCL L:304 , PRO M:200 , PHE M:208 , LDA M:314
BINDING SITE FOR RESIDUE LDA M 313
12
BC3
SOFTWARE
TYR H:40 , LEU H:42 , LDA H:261 , ARG M:253 , PHE M:258 , U10 M:311 , LDA M:313
BINDING SITE FOR RESIDUE LDA M 314
13
BC4
SOFTWARE
VAL L:220 , GLY L:221 , SER M:30 , VAL M:32
BINDING SITE FOR RESIDUE LDA L 307
14
BC5
SOFTWARE
ALA H:25 , ILE H:28 , LDA M:314
BINDING SITE FOR RESIDUE LDA H 261
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: REACTION_CENTER (L:166-192,L:166-192,M:195-221)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
RCEL_RHOS4
167-193
1
L:166-192
RCEL_RHOSH
167-193
1
L:166-192
RCEM_RHOSH
196-222
1
M:195-221
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Exons
(0, 0)
Info
All Exons
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d2gmrh2 (H:36-258)
2a: SCOP_d2gmrl1 (L:1-280)
3a: SCOP_d2gmrm_ (M:)
4a: SCOP_d2gmrh1 (H:11-35)
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Families
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
Photosynthetic reaction centre
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
1a
d2gmrh2
H:36-258
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
L (light) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
2a
d2gmrl1
L:1-280
Protein domain
:
M (medium) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
3a
d2gmrm_
M:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Protein domain
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
4a
d2gmrh1
H:11-35
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2gmrH02 (H:117-249)
2a: CATH_2gmrH01 (H:12-116)
3a: CATH_2gmrM01 (M:4-143)
3b: CATH_2gmrM02 (M:144-300)
3c: CATH_2gmrL01 (L:1-163)
3d: CATH_2gmrL02 (L:164-263)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 2
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 2
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(12)
1a
2gmrH02
H:117-249
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 1
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 1
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(12)
2a
2gmrH01
H:12-116
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Photosynthetic Reaction Center, subunit M; domain 1
(93)
Homologous Superfamily
:
Membrane spanning alpha-helix pairs
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(12)
3a
2gmrM01
M:4-143
3b
2gmrM02
M:144-300
3c
2gmrL01
L:1-163
3d
2gmrL02
L:164-263
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
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Chain M
Asymmetric Unit 1
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