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2GM5
Asym. Unit
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Asym.Unit (84 KB)
Biol.Unit 1 (77 KB)
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(1)
Title
:
AN ACTIVATED, TRUNCATED GAMMA-DELTA RESOLVASE TETRAMER
Authors
:
S. Kamtekar, R. S. Ho, W. Li, T. A. Steitz
Date
:
05 Apr 06 (Deposition) - 27 Jun 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Gamma Delta Resolvase, Site Specific Recombination, Recombination
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Kamtekar, R. S. Ho, M. J. Cocco, W. Li, S. V. Wenwieser, M. R. Boocock, N. D. Grindley, T. A. Steitz
Implications Of Structures Of Synaptic Tetramers Of Gamma Delta Resolvase For The Mechanism Of Recombination.
Proc. Natl. Acad. Sci. Usa V. 103 10642 2006
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
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No.
Name
Count
Type
Full Name
1
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: RECOMBINASES_3 (A:3-128,B:3-123,C:3-125,D:3-127)
2: RECOMBINASES_1 (A:6-14,B:6-11,C:6-9,D:6-14)
3: RECOMBINASES_2 (A:58-70,B:58-70,C:58-70,D:58-70)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RECOMBINASES_3
PS51736
Resolvase/invertase-type recombinase catalytic domain profile.
TNR1_ECOLI
2-137
4
A:3-128
B:3-123
C:3-125
D:3-127
2
RECOMBINASES_1
PS00397
Site-specific recombinases active site.
TNR1_ECOLI
6-14
4
A:6-14
B:6-11
C:6-9
D:6-14
3
RECOMBINASES_2
PS00398
Site-specific recombinases signature 2.
TNR1_ECOLI
58-70
4
A:58-70
B:58-70
C:58-70
D:58-70
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2gm5a_ (A:)
1b: SCOP_d2gm5b_ (B:)
1c: SCOP_d2gm5c_ (C:)
1d: SCOP_d2gm5d_ (D:)
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Protein Domains
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Resolvase-like
(37)
Superfamily
:
Resolvase-like
(11)
Family
:
gamma,delta resolvase, catalytic domain
(9)
Protein domain
:
gamma,delta resolvase, catalytic domain
(9)
Escherichia coli [TaxId: 562]
(9)
1a
d2gm5a_
A:
1b
d2gm5b_
B:
1c
d2gm5c_
C:
1d
d2gm5d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2gm5B00 (B:2-123)
1b: CATH_2gm5C00 (C:2-125)
1c: CATH_2gm5D00 (D:2-127)
1d: CATH_2gm5A00 (A:2-128)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1390, no name defined]
(8)
Escherichia coli. Organism_taxid: 562.
(1)
1a
2gm5B00
B:2-123
1b
2gm5C00
C:2-125
1c
2gm5D00
D:2-127
1d
2gm5A00
A:2-128
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (84 KB)
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