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2GLV
Asym. Unit
Info
Asym.Unit (305 KB)
Biol.Unit 1 (150 KB)
Biol.Unit 2 (151 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF (3R)-HYDROXYACYL-ACYL CARRIER PROTEIN DEHYDRATASE(FABZ) MUTANT(Y100A) FROM HELICOBACTER PYLORI
Authors
:
L. Zhang, W. Liu, X. Shen, H. Jiang
Date
:
05 Apr 06 (Deposition) - 13 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Fabz Mutant, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Zhang, W. Liu, T. Hu, L. Du, C. Luo, K. Chen, X. Shen, H. Jiang
Structural Basis For Catalytic And Inhibitory Mechanisms Of Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz).
J. Biol. Chem. V. 283 5370 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
View:
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No.
Name
Count
Type
Full Name
1
CL
12
Ligand/Ion
CHLORIDE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:101 , HIS B:58 , GLY B:67
BINDING SITE FOR RESIDUE CL B 1001
02
AC2
SOFTWARE
GLY I:67
BINDING SITE FOR RESIDUE CL I 1002
03
AC3
SOFTWARE
PHE E:101 , GLY F:67
BINDING SITE FOR RESIDUE CL E 1003
04
AC4
SOFTWARE
GLY E:67 , PHE F:101 , HOH F:1006 , HOH F:1019
BINDING SITE FOR RESIDUE CL F 1004
05
AC5
SOFTWARE
HIS K:58 , GLY K:67 , PHE L:101
BINDING SITE FOR RESIDUE CL K 1005
06
AC6
SOFTWARE
PHE K:101 , GLY L:67
BINDING SITE FOR RESIDUE CL K 1006
07
AC7
SOFTWARE
PHE I:101 , HOH I:1008 , HOH I:1020
BINDING SITE FOR RESIDUE CL I 1007
08
AC8
SOFTWARE
PHE G:101 , GLY H:67
BINDING SITE FOR RESIDUE CL G 1008
09
AC9
SOFTWARE
GLY G:67
BINDING SITE FOR RESIDUE CL G 1009
10
BC1
SOFTWARE
GLY A:67
BINDING SITE FOR RESIDUE CL A 1010
11
BC2
SOFTWARE
GLY C:67 , PHE D:101
BINDING SITE FOR RESIDUE CL C 1011
12
BC3
SOFTWARE
PHE C:101 , HIS D:58 , GLY D:67
BINDING SITE FOR RESIDUE CL D 1012
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2glva_ (A:)
1b: SCOP_d2glvb_ (B:)
1c: SCOP_d2glvc_ (C:)
1d: SCOP_d2glvd_ (D:)
1e: SCOP_d2glve_ (E:)
1f: SCOP_d2glvf_ (F:)
1g: SCOP_d2glvg_ (G:)
1h: SCOP_d2glvh_ (H:)
1i: SCOP_d2glvi_ (I:)
1j: SCOP_d2glvj_ (J:)
1k: SCOP_d2glvk_ (K:)
1l: SCOP_d2glvl_ (L:)
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)
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)
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)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Thioesterase/thiol ester dehydrase-isomerase
(151)
Superfamily
:
Thioesterase/thiol ester dehydrase-isomerase
(151)
Family
:
FabZ-like
(24)
Protein domain
:
(3R)-hydroxymyristoyl ACP dehydrase FabZ
(24)
Helicobacter pylori [TaxId: 210]
(15)
1a
d2glva_
A:
1b
d2glvb_
B:
1c
d2glvc_
C:
1d
d2glvd_
D:
1e
d2glve_
E:
1f
d2glvf_
F:
1g
d2glvg_
G:
1h
d2glvh_
H:
1i
d2glvi_
I:
1j
d2glvj_
J:
1k
d2glvk_
K:
1l
d2glvl_
L:
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2glvH00 (H:10-157)
1b: CATH_2glvB00 (B:8-157)
1c: CATH_2glvG00 (G:9-158)
1d: CATH_2glvD00 (D:9-159)
1e: CATH_2glvE00 (E:9-159)
1f: CATH_2glvL00 (L:9-159)
1g: CATH_2glvA00 (A:8-159)
1h: CATH_2glvC00 (C:8-159)
1i: CATH_2glvF00 (F:8-159)
1j: CATH_2glvI00 (I:8-159)
1k: CATH_2glvJ00 (J:8-159)
1l: CATH_2glvK00 (K:8-159)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Thiol Ester Dehydrase; Chain A
(90)
Homologous Superfamily
:
[code=3.10.129.10, no name defined]
(90)
Helicobacter pylori. Organism_taxid: 102617. Strain: ss1.
(4)
1a
2glvH00
H:10-157
1b
2glvB00
B:8-157
1c
2glvG00
G:9-158
1d
2glvD00
D:9-159
1e
2glvE00
E:9-159
1f
2glvL00
L:9-159
1g
2glvA00
A:8-159
1h
2glvC00
C:8-159
1i
2glvF00
F:8-159
1j
2glvI00
I:8-159
1k
2glvJ00
J:8-159
1l
2glvK00
K:8-159
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (305 KB)
Header - Asym.Unit
Biol.Unit 1 (150 KB)
Header - Biol.Unit 1
Biol.Unit 2 (151 KB)
Header - Biol.Unit 2
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