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2GLS
Asym. Unit
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Asym.Unit (789 KB)
Biol.Unit 1 (784 KB)
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(1)
Title
:
REFINED ATOMIC MODEL OF GLUTAMINE SYNTHETASE AT 3.5 ANGSTROMS RESOLUTION
Authors
:
D. Eisenberg, R. J. Almassy, M. M. Yamashita
Date
:
19 May 89 (Deposition) - 15 Oct 89 (Release) - 22 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Ligase(Amide Synthetase)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. M. Yamashita, R. J. Almassy, C. A. Janson, D. Cascio, D. Eisenberg
Refined Atomic Model Of Glutamine Synthetase At 3. 5 A Resolution.
J. Biol. Chem. V. 264 17681 1989
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
1e: MANGANESE (II) ION (MNe)
1f: MANGANESE (II) ION (MNf)
1g: MANGANESE (II) ION (MNg)
1h: MANGANESE (II) ION (MNh)
1i: MANGANESE (II) ION (MNi)
1j: MANGANESE (II) ION (MNj)
1k: MANGANESE (II) ION (MNk)
1l: MANGANESE (II) ION (MNl)
1m: MANGANESE (II) ION (MNm)
1n: MANGANESE (II) ION (MNn)
1o: MANGANESE (II) ION (MNo)
1p: MANGANESE (II) ION (MNp)
1q: MANGANESE (II) ION (MNq)
1r: MANGANESE (II) ION (MNr)
1s: MANGANESE (II) ION (MNs)
1t: MANGANESE (II) ION (MNt)
1u: MANGANESE (II) ION (MNu)
1v: MANGANESE (II) ION (MNv)
1w: MANGANESE (II) ION (MNw)
1x: MANGANESE (II) ION (MNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
24
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:131 , GLU A:212 , GLU A:220 , HOH A:471
BINDING SITE FOR RESIDUE MN A 469
02
AC2
SOFTWARE
GLU A:129 , HIS A:269 , GLU A:357 , HOH A:472
BINDING SITE FOR RESIDUE MN A 470
03
AC3
SOFTWARE
GLU B:131 , GLU B:212 , GLU B:220 , HOH B:471
BINDING SITE FOR RESIDUE MN B 469
04
AC4
SOFTWARE
GLU B:129 , HIS B:269 , GLU B:357 , HOH B:472
BINDING SITE FOR RESIDUE MN B 470
05
AC5
SOFTWARE
GLU C:131 , GLU C:212 , GLU C:220 , HOH C:471
BINDING SITE FOR RESIDUE MN C 469
06
AC6
SOFTWARE
GLU C:129 , HIS C:269 , GLU C:357 , HOH C:472
BINDING SITE FOR RESIDUE MN C 470
07
AC7
SOFTWARE
GLU D:131 , GLU D:212 , GLU D:220 , HOH D:471
BINDING SITE FOR RESIDUE MN D 469
08
AC8
SOFTWARE
GLU D:129 , HIS D:269 , GLU D:357 , HOH D:472
BINDING SITE FOR RESIDUE MN D 470
09
AC9
SOFTWARE
GLU E:131 , GLU E:212 , GLU E:220 , HOH E:471
BINDING SITE FOR RESIDUE MN E 469
10
BC1
SOFTWARE
GLU E:129 , HIS E:269 , GLU E:357 , HOH E:472
BINDING SITE FOR RESIDUE MN E 470
11
BC2
SOFTWARE
GLU F:131 , GLU F:212 , GLU F:220 , HOH F:471
BINDING SITE FOR RESIDUE MN F 469
12
BC3
SOFTWARE
GLU F:129 , HIS F:269 , GLU F:357 , HOH F:472
BINDING SITE FOR RESIDUE MN F 470
13
BC4
SOFTWARE
GLU G:131 , GLU G:212 , GLU G:220 , HOH G:471
BINDING SITE FOR RESIDUE MN G 469
14
BC5
SOFTWARE
GLU G:129 , HIS G:269 , GLU G:357 , HOH G:472
BINDING SITE FOR RESIDUE MN G 470
15
BC6
SOFTWARE
GLU H:131 , GLU H:212 , GLU H:220 , HOH H:471
BINDING SITE FOR RESIDUE MN H 469
16
BC7
SOFTWARE
GLU H:129 , HIS H:269 , GLU H:357 , HOH H:472
BINDING SITE FOR RESIDUE MN H 470
17
BC8
SOFTWARE
GLU I:131 , GLU I:212 , GLU I:220 , HOH I:471
BINDING SITE FOR RESIDUE MN I 469
18
BC9
SOFTWARE
GLU I:129 , HIS I:269 , GLU I:357 , HOH I:472
BINDING SITE FOR RESIDUE MN I 470
19
CC1
SOFTWARE
GLU J:131 , GLU J:212 , GLU J:220 , HOH J:471
BINDING SITE FOR RESIDUE MN J 469
20
CC2
SOFTWARE
GLU J:129 , HIS J:269 , GLU J:357 , HOH J:472
BINDING SITE FOR RESIDUE MN J 470
21
CC3
SOFTWARE
GLU K:131 , GLU K:212 , GLU K:220 , HOH K:471
BINDING SITE FOR RESIDUE MN K 469
22
CC4
SOFTWARE
GLU K:129 , HIS K:269 , GLU K:357 , HOH K:472
BINDING SITE FOR RESIDUE MN K 470
23
CC5
SOFTWARE
GLU L:131 , GLU L:212 , GLU L:220 , HOH L:471
BINDING SITE FOR RESIDUE MN L 469
24
CC6
SOFTWARE
GLU L:129 , HIS L:269 , GLU L:357 , HOH L:472
BINDING SITE FOR RESIDUE MN L 470
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(3, 36)
Info
All PROSITE Patterns/Profiles
1: GLNA_1 (A:49-67,B:49-67,C:49-67,D:49-67,E:...)
2: GLNA_ATP (A:258-273,B:258-273,C:258-273,D:25...)
3: GLNA_ADENYLATION (A:385-397,B:385-397,C:385-397,D:38...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLNA_1
PS00180
Glutamine synthetase signature 1.
GLN1B_SALTY
50-68
12
A:49-67
B:49-67
C:49-67
D:49-67
E:49-67
F:49-67
G:49-67
H:49-67
I:49-67
J:49-67
K:49-67
L:49-67
2
GLNA_ATP
PS00181
Glutamine synthetase putative ATP-binding region signature.
GLN1B_SALTY
259-274
12
A:258-273
B:258-273
C:258-273
D:258-273
E:258-273
F:258-273
G:258-273
H:258-273
I:258-273
J:258-273
K:258-273
L:258-273
3
GLNA_ADENYLATION
PS00182
Glutamine synthetase class-I adenylation site.
GLN1B_SALTY
386-398
12
A:385-397
B:385-397
C:385-397
D:385-397
E:385-397
F:385-397
G:385-397
H:385-397
I:385-397
J:385-397
K:385-397
L:385-397
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d2glsa1 (A:1-100)
1b: SCOP_d2glsb1 (B:1-100)
1c: SCOP_d2glsc1 (C:1-100)
1d: SCOP_d2glsd1 (D:1-100)
1e: SCOP_d2glse1 (E:1-100)
1f: SCOP_d2glsf1 (F:1-100)
1g: SCOP_d2glsg1 (G:1-100)
1h: SCOP_d2glsh1 (H:1-100)
1i: SCOP_d2glsi1 (I:1-100)
1j: SCOP_d2glsj1 (J:1-100)
1k: SCOP_d2glsk1 (K:1-100)
1l: SCOP_d2glsl1 (L:1-100)
2a: SCOP_d2glsa2 (A:101-468)
2b: SCOP_d2glsb2 (B:101-468)
2c: SCOP_d2glsc2 (C:101-468)
2d: SCOP_d2glsd2 (D:101-468)
2e: SCOP_d2glse2 (E:101-468)
2f: SCOP_d2glsf2 (F:101-468)
2g: SCOP_d2glsg2 (G:101-468)
2h: SCOP_d2glsh2 (H:101-468)
2i: SCOP_d2glsi2 (I:101-468)
2j: SCOP_d2glsj2 (J:101-468)
2k: SCOP_d2glsk2 (K:101-468)
2l: SCOP_d2glsl2 (L:101-468)
View:
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Classes
(
)
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)
Folds
(
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)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Glutamine synthetase, N-terminal domain
(20)
Family
:
Glutamine synthetase, N-terminal domain
(8)
Protein domain
:
Glutamine synthetase, N-terminal domain
(8)
Salmonella typhimurium [TaxId: 90371]
(6)
1a
d2glsa1
A:1-100
1b
d2glsb1
B:1-100
1c
d2glsc1
C:1-100
1d
d2glsd1
D:1-100
1e
d2glse1
E:1-100
1f
d2glsf1
F:1-100
1g
d2glsg1
G:1-100
1h
d2glsh1
H:1-100
1i
d2glsi1
I:1-100
1j
d2glsj1
J:1-100
1k
d2glsk1
K:1-100
1l
d2glsl1
L:1-100
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
Glutamine synthetase catalytic domain
(8)
Protein domain
:
Glutamine synthetase, C-terminal domain
(8)
Salmonella typhimurium [TaxId: 90371]
(6)
2a
d2glsa2
A:101-468
2b
d2glsb2
B:101-468
2c
d2glsc2
C:101-468
2d
d2glsd2
D:101-468
2e
d2glse2
E:101-468
2f
d2glsf2
F:101-468
2g
d2glsg2
G:101-468
2h
d2glsh2
H:101-468
2i
d2glsi2
I:101-468
2j
d2glsj2
J:101-468
2k
d2glsk2
K:101-468
2l
d2glsl2
L:101-468
[
close SCOP info
]
CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_2glsA01 (A:104-456)
1b: CATH_2glsB01 (B:104-456)
1c: CATH_2glsC01 (C:104-456)
1d: CATH_2glsD01 (D:104-456)
1e: CATH_2glsE01 (E:104-456)
1f: CATH_2glsF01 (F:104-456)
1g: CATH_2glsG01 (G:104-456)
1h: CATH_2glsH01 (H:104-456)
1i: CATH_2glsI01 (I:104-456)
1j: CATH_2glsJ01 (J:104-456)
1k: CATH_2glsK01 (K:104-456)
1l: CATH_2glsL01 (L:104-456)
2a: CATH_2glsA02 (A:1-103)
2b: CATH_2glsB02 (B:1-103)
2c: CATH_2glsC02 (C:1-103)
2d: CATH_2glsD02 (D:1-103)
2e: CATH_2glsE02 (E:1-103)
2f: CATH_2glsF02 (F:1-103)
2g: CATH_2glsG02 (G:1-103)
2h: CATH_2glsH02 (H:1-103)
2i: CATH_2glsI02 (I:1-103)
2j: CATH_2glsJ02 (J:1-103)
2k: CATH_2glsK02 (K:1-103)
2l: CATH_2glsL02 (L:1-103)
View:
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)
(
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Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Creatine Kinase; Chain A, domain 2
(27)
Homologous Superfamily
:
Creatine Kinase; Chain
(27)
Salmonella typhimurium. Organism_taxid: 602
(3)
1a
2glsA01
A:104-456
1b
2glsB01
B:104-456
1c
2glsC01
C:104-456
1d
2glsD01
D:104-456
1e
2glsE01
E:104-456
1f
2glsF01
F:104-456
1g
2glsG01
G:104-456
1h
2glsH01
H:104-456
1i
2glsI01
I:104-456
1j
2glsJ01
J:104-456
1k
2glsK01
K:104-456
1l
2glsL01
L:104-456
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.70, no name defined]
(11)
Salmonella typhimurium. Organism_taxid: 602
(3)
2a
2glsA02
A:1-103
2b
2glsB02
B:1-103
2c
2glsC02
C:1-103
2d
2glsD02
D:1-103
2e
2glsE02
E:1-103
2f
2glsF02
F:1-103
2g
2glsG02
G:1-103
2h
2glsH02
H:1-103
2i
2glsI02
I:1-103
2j
2glsJ02
J:1-103
2k
2glsK02
K:1-103
2l
2glsL02
L:1-103
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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