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Getting 'Exon' information from database.
2GLI
Asym. Unit
Info
Asym.Unit (50 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
FIVE-FINGER GLI/DNA COMPLEX
Authors
:
N. P. Pavletich, C. O. Pabo
Date
:
09 Nov 93 (Deposition) - 09 Nov 93 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,C,D
Biol. Unit 1: A,C,D (1x)
Keywords
:
Protein/Dna Complex, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. P. Pavletich, C. O. Pabo
Crystal Structure Of A Five-Finger Gli-Dna Complex: New Perspectives On Zinc Fingers.
Science V. 261 1701 1993
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
1e: COBALT (II) ION (COe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
5
Ligand/Ion
COBALT (II) ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:106 , CYS A:111 , HIS A:124 , HIS A:129
BINDING SITE FOR RESIDUE CO A 258
2
AC2
SOFTWARE
CYS A:139 , CYS A:144 , HIS A:160 , HIS A:164
BINDING SITE FOR RESIDUE CO A 259
3
AC3
SOFTWARE
CYS A:172 , CYS A:177 , HIS A:190 , HIS A:194
BINDING SITE FOR RESIDUE CO A 260
4
AC4
SOFTWARE
CYS A:202 , CYS A:207 , HIS A:220 , HIS A:225
BINDING SITE FOR RESIDUE CO A 261
5
AC5
SOFTWARE
CYS A:233 , CYS A:238 , HIS A:251 , HIS A:256
BINDING SITE FOR RESIDUE CO A 262
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (A:106-129|A:172-194|A:202-225|A:23...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
GLI1_HUMAN
237-260
303-325
333-356
364-387
4
A:106-129
A:172-194
A:202-225
A:233-256
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.8a (A:103-123)
Exon 1.9b (A:124-173)
Exon 1.10 (A:174-228)
Exon 1.11 (A:229-257)
View:
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All Exon Boundaries
1: Boundary 1.7b/1.8a
2: Boundary 1.8a/1.9b
3: Boundary 1.9b/1.10
4: Boundary 1.10/1.11
5: Boundary 1.11/1.12
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000228682
1b
ENSE00002170467
chr12:
57853921-57853984
64
GLI1_HUMAN
-
0
0
-
-
1.3a
ENST00000228682
3a
ENSE00002178385
chr12:
57857448-57857574
127
GLI1_HUMAN
1-34
34
0
-
-
1.4
ENST00000228682
4
ENSE00001619249
chr12:
57857782-57857874
93
GLI1_HUMAN
34-65
32
0
-
-
1.5b
ENST00000228682
5b
ENSE00001792168
chr12:
57858456-57858651
196
GLI1_HUMAN
65-130
66
0
-
-
1.6
ENST00000228682
6
ENSE00000751003
chr12:
57858894-57859038
145
GLI1_HUMAN
130-178
49
0
-
-
1.7b
ENST00000228682
7b
ENSE00000751004
chr12:
57859390-57859479
90
GLI1_HUMAN
179-208
30
0
-
-
1.8a
ENST00000228682
8a
ENSE00000751005
chr12:
57859571-57859708
138
GLI1_HUMAN
209-254
46
1
A:103-123
21
1.9b
ENST00000228682
9b
ENSE00001733880
chr12:
57860023-57860172
150
GLI1_HUMAN
255-304
50
1
A:124-173
50
1.10
ENST00000228682
10
ENSE00001621207
chr12:
57861116-57861280
165
GLI1_HUMAN
305-359
55
1
A:174-228
55
1.11
ENST00000228682
11
ENSE00000751008
chr12:
57861777-57862007
231
GLI1_HUMAN
360-436
77
1
A:229-257
29
1.12
ENST00000228682
12
ENSE00000751009
chr12:
57863214-57863481
268
GLI1_HUMAN
437-526
90
0
-
-
1.13b
ENST00000228682
13b
ENSE00001278393
chr12:
57864100-57866045
1946
GLI1_HUMAN
526-1106
581
0
-
-
[
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]
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d2glia1 (A:103-134)
1b: SCOP_d2glia2 (A:135-167)
1c: SCOP_d2glia3 (A:168-197)
1d: SCOP_d2glia4 (A:198-228)
1e: SCOP_d2glia5 (A:229-257)
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Classes
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)
(
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Folds
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(
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Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
beta-beta-alpha zinc fingers
(183)
Superfamily
:
beta-beta-alpha zinc fingers
(183)
Family
:
Classic zinc finger, C2H2
(162)
Protein domain
:
Five-finger GLI1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2glia1
A:103-134
1b
d2glia2
A:135-167
1c
d2glia3
A:168-197
1d
d2glia4
A:198-228
1e
d2glia5
A:229-257
[
close SCOP info
]
CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_2gliA03 (A:168-197)
1b: CATH_2gliA01 (A:103-135)
1c: CATH_2gliA02 (A:136-167)
1d: CATH_2gliA04 (A:198-228)
1e: CATH_2gliA05 (A:229-257)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Double Stranded RNA Binding Domain
(204)
Homologous Superfamily
:
Classic Zinc Finger
(45)
[unclassified]
(29)
1a
2gliA03
A:168-197
1b
2gliA01
A:103-135
1c
2gliA02
A:136-167
1d
2gliA04
A:198-228
1e
2gliA05
A:229-257
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain C
Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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