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2GL3
Asym. Unit
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Asym.Unit (51 KB)
Biol.Unit 1 (46 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS TRHBN, TYRB10PHE GLNE11VAL MUTANT
Authors
:
M. Milani, M. Bolognesi
Date
:
04 Apr 06 (Deposition) - 19 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Truncated Hemoglobin; Mutant, Oxygen Storage/Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Ouellet, M. Milani, M. Couture, M. Bolognesi, M. Guertin
Ligand Interactions In The Distal Heme Pocket Of Mycobacterium Tuberculosis Truncated Hemoglobin N: Roles Of Tyrb10 And Glne11 Residues
Biochemistry V. 45 8770 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: CYANIDE ION (CYNa)
1b: CYANIDE ION (CYNb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: SODIUM ION (NAa)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CYN
2
Ligand/Ion
CYANIDE ION
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
NA
1
Ligand/Ion
SODIUM ION
4
PO4
3
Ligand/Ion
PHOSPHATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:79 , VAL A:80 , GLN A:82 , GLY B:83
BINDING SITE FOR RESIDUE NA A 3001
2
AC2
SOFTWARE
GLY B:2 , ARG B:6 , TYR B:16 , ASP B:17 , HIS B:22 , HOH B:5040 , HOH B:5044 , HOH B:5058
BINDING SITE FOR RESIDUE PO4 B 5001
3
AC3
SOFTWARE
PRO A:108 , SER A:109 , HOH A:5030
BINDING SITE FOR RESIDUE PO4 A 5002
4
AC4
SOFTWARE
VAL A:34 , ARG A:35 , HOH A:5051 , ALA B:75
BINDING SITE FOR RESIDUE PO4 A 5003
5
AC5
SOFTWARE
PHE A:33 , HEM A:144
BINDING SITE FOR RESIDUE CYN A 145
6
AC6
SOFTWARE
PHE B:33 , HEM B:144
BINDING SITE FOR RESIDUE CYN B 145
7
AC7
SOFTWARE
PHE A:45 , PHE A:46 , THR A:49 , ARG A:53 , LEU A:54 , PHE A:61 , PHE A:62 , TYR A:72 , GLY A:74 , ALA A:75 , MET A:77 , VAL A:80 , HIS A:81 , ILE A:86 , PHE A:91 , VAL A:94 , ILE A:119 , LEU A:122 , VAL A:126 , CYN A:145 , HOH A:5098
BINDING SITE FOR RESIDUE HEM A 144
8
AC8
SOFTWARE
HOH A:5018 , PHE B:45 , PHE B:46 , THR B:49 , ARG B:53 , LEU B:54 , LYS B:57 , PHE B:61 , PHE B:62 , TYR B:72 , GLY B:74 , ALA B:75 , MET B:77 , VAL B:80 , HIS B:81 , ARG B:84 , ILE B:86 , PHE B:91 , VAL B:94 , ILE B:119 , VAL B:126 , CYN B:145 , HOH B:5084
BINDING SITE FOR RESIDUE HEM B 144
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GLOBIN_FAM_2 (A:61-81,B:61-81,A:61-81,B:61-81)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN_FAM_2
PS01213
Protozoan/cyanobacterial globins signature.
TRHBN_MYCTO
61-81
2
A:61-81
B:61-81
TRHBN_MYCTU
61-81
2
A:61-81
B:61-81
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2gl3a_ (A:)
1b: SCOP_d2gl3b_ (B:)
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Classes
(
)
(
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Truncated hemoglobin
(27)
Protein domain
:
Protozoan/bacterial hemoglobin
(22)
Mycobacterium tuberculosis, HbN [TaxId: 1773]
(8)
1a
d2gl3a_
A:
1b
d2gl3b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2gl3A00 (A:2-129)
1b: CATH_2gl3B00 (B:2-128)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(8)
1a
2gl3A00
A:2-129
1b
2gl3B00
B:2-128
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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