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2GJZ
Biol. Unit 5
Info
Asym.Unit (143 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (70 KB)
Biol.Unit 3 (135 KB)
Biol.Unit 4 (135 KB)
Biol.Unit 5 (135 KB)
Biol.Unit 6 (135 KB)
Biol.Unit 7 (135 KB)
Biol.Unit 8 (135 KB)
Biol.Unit 9 (70 KB)
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(1)
Title
:
STRUCTURE OF CATALYTIC ELIMINATION ANTIBODY 13G5 FROM A CRYSTAL IN SPACE GROUP P2(1)
Authors
:
E. W. Debler, I. A. Wilson
Date
:
31 Mar 06 (Deposition) - 06 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,H,L
Biol. Unit 1: H,L (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: A,B,H,L (1x)
Biol. Unit 4: A,B,H,L (1x)
Biol. Unit 5: A,B,H,L (1x)
Biol. Unit 6: A,B,H,L (1x)
Biol. Unit 7: A,B,H,L (1x)
Biol. Unit 8: A,B,H,L (1x)
Biol. Unit 9: A,B (1x)
Keywords
:
Immunoglobulin, Catalytic Antibody, Elimination, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. Muller, E. W. Debler, M. Steinmann, F. P. Seebeck, I. A. Wilson, D. Hilvert
Bifunctional Catalysis Of Proton Transfer At An Antibody Active Site.
J. Am. Chem. Soc. V. 129 460 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS L:27D
BINDING SITE FOR RESIDUE ZN L 213
02
AC2
SOFTWARE
ASP L:60
BINDING SITE FOR RESIDUE ZN L 214
03
AC3
SOFTWARE
HIS H:172 , HOH H:232 , ASN L:138 , ASP L:167
BINDING SITE FOR RESIDUE ZN L 215
04
AC4
SOFTWARE
ASP L:151 , HIS L:189 , HOH L:222
BINDING SITE FOR RESIDUE ZN L 216
05
AC5
SOFTWARE
ASP H:35 , HIS H:95 , HOH H:231
BINDING SITE FOR RESIDUE ZN H 229
06
AC6
SOFTWARE
HIS H:102
BINDING SITE FOR RESIDUE ZN H 230
07
AC7
SOFTWARE
ASN A:138 , ASP A:167 , HIS B:172
BINDING SITE FOR RESIDUE ZN B 229
08
AC8
SOFTWARE
ASP A:151 , HIS A:189 , HOH A:214
BINDING SITE FOR RESIDUE ZN A 213
09
AC9
SOFTWARE
HIS L:93 , HOH L:219 , HOH L:223
BINDING SITE FOR RESIDUE ZN L 217
10
BC1
SOFTWARE
ASP B:35 , HIS B:95 , HOH B:240
BINDING SITE FOR RESIDUE ZN B 230
11
BC2
SOFTWARE
HIS B:102
BINDING SITE FOR RESIDUE ZN B 231
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2gjza2 (A:109-212)
1b: SCOP_d2gjzl2 (L:109-212)
2a: SCOP_d2gjza1 (A:1-108)
2b: SCOP_d2gjzl1 (L:1-108)
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Protein Domains
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(
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Organisms
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)
(
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Mouse (Mus musculus) [TaxId: 10090]
(360)
1a
d2gjza2
A:109-212
1b
d2gjzl2
L:109-212
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Mouse (Mus musculus) [TaxId: 10090]
(112)
2a
d2gjza1
A:1-108
2b
d2gjzl1
L:1-108
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2gjzA02 (A:110-209)
1b: CATH_2gjzB02 (B:115-228)
1c: CATH_2gjzH02 (H:115-228)
1d: CATH_2gjzA01 (A:1-108)
1e: CATH_2gjzL01 (L:1-108)
1f: CATH_2gjzB01 (B:1-114)
1g: CATH_2gjzH01 (H:1-114)
1h: CATH_2gjzL02 (L:110-209)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
2gjzA02
A:110-209
1b
2gjzB02
B:115-228
1c
2gjzH02
H:115-228
1d
2gjzA01
A:1-108
1e
2gjzL01
L:1-108
1f
2gjzB01
B:1-114
1g
2gjzH01
H:1-114
1h
2gjzL02
L:110-209
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Pfam Domains
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Show PDB file:
Asym.Unit (143 KB)
Header - Asym.Unit
Biol.Unit 1 (69 KB)
Header - Biol.Unit 1
Biol.Unit 2 (70 KB)
Header - Biol.Unit 2
Biol.Unit 3 (135 KB)
Header - Biol.Unit 3
Biol.Unit 4 (135 KB)
Header - Biol.Unit 4
Biol.Unit 5 (135 KB)
Header - Biol.Unit 5
Biol.Unit 6 (135 KB)
Header - Biol.Unit 6
Biol.Unit 7 (135 KB)
Header - Biol.Unit 7
Biol.Unit 8 (135 KB)
Header - Biol.Unit 8
Biol.Unit 9 (70 KB)
Header - Biol.Unit 9
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