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2GIC
Biol. Unit 1
Info
Asym.Unit (349 KB)
Biol.Unit 1 (676 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A VESICULAR STOMATITIS VIRUS NUCLEOCAPSID-RNA COMPLEX
Authors
:
T. J. Green, X. Zhang, G. W. Wertz, M. Luo
Date
:
28 Mar 06 (Deposition) - 22 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.92
Chains
:
Asym. Unit : A,B,C,D,E,R
Biol. Unit 1: A,B,C,D,E,R (2x)
Keywords
:
Nucleocapsid, Protein-Rna Complex, Negative Strand Virus, Virus-Viral Protein-Rna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. J. Green, X. Zhang, G. W. Wertz, M. Luo
Structure Of The Vesicular Stomatitis Virus Nucleoprotein-Rna Complex Unveils How The Rna Is Sequestere
Science V. 313 357 2006
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Hetero Components
(1, 30)
Info
All Hetero Components
1a: URANYL (VI) ION (IUMa)
1b: URANYL (VI) ION (IUMb)
1c: URANYL (VI) ION (IUMc)
1d: URANYL (VI) ION (IUMd)
1e: URANYL (VI) ION (IUMe)
1f: URANYL (VI) ION (IUMf)
1g: URANYL (VI) ION (IUMg)
1h: URANYL (VI) ION (IUMh)
1i: URANYL (VI) ION (IUMi)
1j: URANYL (VI) ION (IUMj)
1k: URANYL (VI) ION (IUMk)
1l: URANYL (VI) ION (IUMl)
1m: URANYL (VI) ION (IUMm)
1n: URANYL (VI) ION (IUMn)
1o: URANYL (VI) ION (IUMo)
View:
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No.
Name
Count
Type
Full Name
1
IUM
30
Ligand/Ion
URANYL (VI) ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:123 , ASP A:374 , GLU A:377
BINDING SITE FOR RESIDUE IUM A 423
02
AC2
SOFTWARE
GLU A:253 , GLU A:323 , ASP B:343
BINDING SITE FOR RESIDUE IUM A 424
03
AC3
SOFTWARE
ASP B:123 , ASP B:374
BINDING SITE FOR RESIDUE IUM B 423
04
AC4
SOFTWARE
GLU B:253 , GLU B:323 , ASP C:343
BINDING SITE FOR RESIDUE IUM B 424
05
AC5
SOFTWARE
ASP C:374 , GLU C:377
BINDING SITE FOR RESIDUE IUM C 423
06
AC6
SOFTWARE
GLU C:253 , GLU C:323 , ASP D:343
BINDING SITE FOR RESIDUE IUM C 424
07
AC7
SOFTWARE
ASP D:123 , GLU D:377
BINDING SITE FOR RESIDUE IUM D 423
08
AC8
SOFTWARE
GLU D:253 , GLU D:323 , ASP E:343
BINDING SITE FOR RESIDUE IUM D 424
09
AC9
SOFTWARE
ASP E:374
BINDING SITE FOR RESIDUE IUM E 423
10
BC1
SOFTWARE
ASP A:343 , ARG E:252 , GLU E:253 , GLU E:323
BINDING SITE FOR RESIDUE IUM E 424
11
BC2
SOFTWARE
ASP D:384 , ASP E:358
BINDING SITE FOR RESIDUE IUM E 425
12
BC3
SOFTWARE
ASP A:384 , ASP B:358
BINDING SITE FOR RESIDUE IUM A 426
13
BC4
SOFTWARE
ASP B:384
BINDING SITE FOR RESIDUE IUM B 425
14
BC5
SOFTWARE
ASP C:384
BINDING SITE FOR RESIDUE IUM C 425
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d2gica1 (A:2-422)
1b: SCOP_d2gicb_ (B:)
1c: SCOP_d2gicc_ (C:)
1d: SCOP_d2gicd_ (D:)
1e: SCOP_d2gice_ (E:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Rhabdovirus nucleoprotein-like
(6)
Superfamily
:
Rhabdovirus nucleoprotein-like
(6)
Family
:
Rhabdovirus nucleocapsid protein
(6)
Protein domain
:
Nucleoprotein
(5)
Vesicular stomatitis indiana virus [TaxId: 11277]
(4)
1a
d2gica1
A:2-422
1b
d2gicb_
B:
1c
d2gicc_
C:
1d
d2gicd_
D:
1e
d2gice_
E:
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CATH Domains
(2, 10)
Info
all CATH domains
1a: CATH_2gicA02 (A:222-421)
1b: CATH_2gicE02 (E:222-421)
1c: CATH_2gicD02 (D:222-421)
1d: CATH_2gicB02 (B:222-421)
1e: CATH_2gicC02 (C:222-421)
2a: CATH_2gicA01 (A:37-219)
2b: CATH_2gicB01 (B:37-219)
2c: CATH_2gicC01 (C:37-219)
2d: CATH_2gicD01 (D:37-219)
2e: CATH_2gicE01 (E:37-219)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Rhabdovirus nucleoprotein-like
(4)
Homologous Superfamily
:
Nucleoprotein
(4)
[unclassified]
(1)
1a
2gicA02
A:222-421
1b
2gicE02
E:222-421
1c
2gicD02
D:222-421
1d
2gicB02
B:222-421
1e
2gicC02
C:222-421
Topology
:
Rhabdovirus nucleoprotein-like fold
(4)
Homologous Superfamily
:
Rhabdovirus nucleocapsid protein like domain
(4)
[unclassified]
(1)
2a
2gicA01
A:37-219
2b
2gicB01
B:37-219
2c
2gicC01
C:37-219
2d
2gicD01
D:37-219
2e
2gicE01
E:37-219
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (349 KB)
Header - Asym.Unit
Biol.Unit 1 (676 KB)
Header - Biol.Unit 1
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