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2GH5
Biol. Unit 1
Info
Asym.Unit (169 KB)
Biol.Unit 1 (163 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GLUTATHIONE REDUCTASE COMPLEXED WITH A FLUORO-ANALOGUE OF THE MENADIONE DERIVATIVE M5
Authors
:
K. Fritz-Wolf, A. Winzer, H. Bauer, H. Schirmer, E. Davioud-Charvet
Date
:
25 Mar 06 (Deposition) - 26 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Human Glutathione Reductase; A Fluoro-Analogue Of The Menadione Derivative M5, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Bauer, K. Fritz-Wolf, A. Winzer, S. Little, V. Yardley, H. Vezin, B. Palfey, R. H. Schirmer, E. Davioud-Charvet
A Fluoro Analogue Of The Menadione Derivative 6-[2'-(3'-Methyl)-1', 4'-Naphthoquinolyl]Hexanoic Acid Is A Suicide Substrate Of Glutathione Reductase. Crystal Structure Of The Alkylated Human Enzyme
J. Am. Chem. Soc. V. 128 10784 2006
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: 6-(3-METHYL-1,4-DIOXO-1,4-DIHYDRON... (ELIa)
1b: 6-(3-METHYL-1,4-DIOXO-1,4-DIHYDRON... (ELIb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ELI
2
Ligand/Ion
6-(3-METHYL-1,4-DIOXO-1,4-DIHYDRONAPHTHALEN-2-YL)HEXANOIC ACID
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
GOL
12
Ligand/Ion
GLYCEROL
4
PO4
4
Ligand/Ion
PHOSPHATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:218 , HIS A:219 , HOH A:5990
BINDING SITE FOR RESIDUE PO4 A 5703
02
AC2
SOFTWARE
ARG B:218 , HIS B:219 , PO4 B:5705 , HOH B:5952
BINDING SITE FOR RESIDUE PO4 B 5704
03
AC3
SOFTWARE
ARG B:218 , HIS B:219 , ARG B:224 , GOL B:803 , PO4 B:5704 , HOH B:5721 , HOH B:5882 , HOH B:5883
BINDING SITE FOR RESIDUE PO4 B 5705
04
AC4
SOFTWARE
ARG A:218 , HIS A:219 , ARG A:224 , GOL A:808 , HOH A:5722 , HOH A:5895 , HOH A:5900
BINDING SITE FOR RESIDUE PO4 A 5706
05
AC5
SOFTWARE
SER A:30 , LEU A:33 , ALA A:34 , ARG A:37 , GLY A:55 , CYS A:58 , VAL A:59 , LEU A:110 , TYR A:114 , THR A:339 , ARG A:347 , HOH A:5822 , HIS B:467 , GOL B:806
BINDING SITE FOR RESIDUE ELI A 958
06
AC6
SOFTWARE
HIS A:467 , SER B:30 , ALA B:34 , ARG B:37 , GLY B:55 , CYS B:58 , VAL B:59 , LEU B:110 , TYR B:114 , THR B:339 , ARG B:347
BINDING SITE FOR RESIDUE ELI B 958
07
AC7
SOFTWARE
GLY A:27 , GLY A:29 , SER A:30 , GLY A:31 , VAL A:49 , GLU A:50 , SER A:51 , HIS A:52 , GLY A:56 , THR A:57 , CYS A:58 , GLY A:62 , CYS A:63 , LYS A:66 , GLY A:128 , HIS A:129 , ALA A:130 , ALA A:155 , THR A:156 , GLY A:157 , TYR A:197 , ARG A:291 , GLY A:330 , ASP A:331 , LEU A:337 , LEU A:338 , THR A:339 , PRO A:340 , HOH A:5707 , HOH A:5708 , HOH A:5713 , HOH A:5779 , HOH A:5821 , HOH A:5987 , HOH A:6030 , HOH A:6049 , HIS B:467 , PRO B:468
BINDING SITE FOR RESIDUE FAD A 479
08
AC8
SOFTWARE
HIS A:467 , PRO A:468 , GLY B:27 , GLY B:29 , SER B:30 , GLY B:31 , VAL B:49 , GLU B:50 , SER B:51 , HIS B:52 , GLY B:56 , THR B:57 , CYS B:58 , CYS B:63 , LYS B:66 , GLY B:128 , HIS B:129 , ALA B:130 , ALA B:155 , THR B:156 , GLY B:157 , TYR B:197 , ARG B:291 , LEU B:298 , GLY B:330 , ASP B:331 , LEU B:337 , LEU B:338 , THR B:339 , PRO B:340 , HOH B:5708 , HOH B:5723 , HOH B:5735 , HOH B:5889 , HOH B:5891 , HOH B:5892 , HOH B:5906 , HOH B:5920 , HOH B:5967
BINDING SITE FOR RESIDUE FAD B 479
09
AC9
SOFTWARE
SER B:228 , MET B:229 , THR B:232 , LYS B:420 , HOH B:5872
BINDING SITE FOR RESIDUE GOL B 801
10
BC1
SOFTWARE
LEU B:54 , ARG B:127
BINDING SITE FOR RESIDUE GOL B 802
11
BC2
SOFTWARE
ALA B:195 , LEU B:223 , ARG B:224 , SER B:225 , PHE B:226 , PO4 B:5705 , HOH B:5884
BINDING SITE FOR RESIDUE GOL B 803
12
BC3
SOFTWARE
THR B:404 , HOH B:5840
BINDING SITE FOR RESIDUE GOL B 805
13
BC4
SOFTWARE
GOL A:813 , ELI A:958 , HIS B:467 , GLU B:472 , GLU B:473
BINDING SITE FOR RESIDUE GOL B 806
14
BC5
SOFTWARE
ALA A:195 , GLY A:196 , ALA A:288 , PO4 A:5706 , HOH A:5738 , HOH A:5902 , HOH A:6004
BINDING SITE FOR RESIDUE GOL A 808
15
BC6
SOFTWARE
ASN A:95 , ARG A:97
BINDING SITE FOR RESIDUE GOL A 809
16
BC7
SOFTWARE
PHE A:403 , THR A:404
BINDING SITE FOR RESIDUE GOL A 810
17
BC8
SOFTWARE
THR A:476 , ARG A:478 , ARG B:347 , HOH B:5863
BINDING SITE FOR RESIDUE GOL B 811
18
BC9
SOFTWARE
GLU B:77 , PHE B:78 , HIS B:374 , PRO B:375 , ARG B:413 , HOH B:5765
BINDING SITE FOR RESIDUE GOL B 812
19
CC1
SOFTWARE
ARG A:347 , HOH A:5997 , GOL B:806
BINDING SITE FOR RESIDUE GOL A 813
20
CC2
SOFTWARE
GLU A:77 , HIS A:374 , ARG A:413 , THR A:415 , HOH A:5762 , HOH A:5975
BINDING SITE FOR RESIDUE GOL A 817
[
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]
SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_019079 (R109C, chain A/B, )
2: VAR_051775 (G188R, chain A/B, )
3: VAR_019080 (G188S, chain A/B, )
4: VAR_019081 (I217V, chain A/B, )
5: VAR_019082 (E253D, chain A/B, )
6: VAR_014554 (P270H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019079
R
153
C
GSHR_HUMAN
Polymorphism
8190955
A/B
R
109
C
2
UniProt
VAR_051775
G
232
R
GSHR_HUMAN
Polymorphism
8190976
A/B
G
188
R
3
UniProt
VAR_019080
G
232
S
GSHR_HUMAN
Polymorphism
8190976
A/B
G
188
S
4
UniProt
VAR_019081
I
261
V
GSHR_HUMAN
Polymorphism
8190997
A/B
I
217
V
5
UniProt
VAR_019082
E
297
D
GSHR_HUMAN
Polymorphism
8191004
A/B
E
253
D
6
UniProt
VAR_014554
P
314
H
GSHR_HUMAN
Polymorphism
2020916
A/B
P
270
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PYRIDINE_REDOX_1 (A:55-65,B:55-65)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
GSHR_HUMAN
99-109
2
A:55-65
B:55-65
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2gh5a3 (A:364-478)
1b: SCOP_d2gh5b3 (B:364-478)
2a: SCOP_d2gh5a1 (A:18-165,A:291-363)
2b: SCOP_d2gh5a2 (A:166-290)
2c: SCOP_d2gh5b1 (B:18-165,B:291-363)
2d: SCOP_d2gh5b2 (B:166-290)
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(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
Glutathione reductase
(27)
Human (Homo sapiens) [TaxId: 9606]
(22)
1a
d2gh5a3
A:364-478
1b
d2gh5b3
B:364-478
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
Glutathione reductase
(27)
Human (Homo sapiens) [TaxId: 9606]
(22)
2a
d2gh5a1
A:18-165,A:291-363
2b
d2gh5a2
A:166-290
2c
d2gh5b1
B:18-165,B:291-363
2d
d2gh5b2
B:166-290
[
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]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2gh5A03 (A:366-478)
1b: CATH_2gh5B03 (B:366-478)
2a: CATH_2gh5A01 (A:18-160,A:290-365)
2b: CATH_2gh5B01 (B:18-160,B:290-365)
2c: CATH_2gh5A02 (A:161-289)
2d: CATH_2gh5B02 (B:161-289)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Human (Homo sapiens)
(26)
1a
2gh5A03
A:366-478
1b
2gh5B03
B:366-478
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Human (Homo sapiens)
(57)
2a
2gh5A01
A:18-160,A:290-365
2b
2gh5B01
B:18-160,B:290-365
2c
2gh5A02
A:161-289
2d
2gh5B02
B:161-289
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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