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Asym.Unit (720 KB)
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Models
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Title
:
SOLUTION STRUCTURE OF THE MA3 DOMAIN OF HUMAN PROGRAMMED CELL DEATH 4
Authors
:
T. Nagata, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
24 Mar 06 (Deposition) - 24 Apr 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Ma3, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Translation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nagata, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Solution Structure Of The Ma3 Domain Of Human Programmed Cell Death 4
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: MI (-|A:327-449)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MI
PS51366
MI domain profile.
PDCD4_HUMAN
163-284
326-449
1
-
A:327-449
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Exons
(5, 5)
Info
All Exons
Exon 1.11a (A:320-330 (gaps))
Exon 1.12b (A:331-366)
Exon 1.13 (A:367-403)
Exon 1.14b (A:404-450)
Exon 1.15e (A:450-456 (gaps))
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1: Boundary 1.10/1.11a
2: Boundary 1.11a/1.12b
3: Boundary 1.12b/1.13
4: Boundary 1.13/1.14b
5: Boundary 1.14b/1.15e
6: Boundary 1.15e/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000280154
1a
ENSE00001922986
chr10:
112631565-112631776
212
PDCD4_HUMAN
-
0
0
-
-
1.2
ENST00000280154
2
ENSE00002190882
chr10:
112635724-112635828
105
PDCD4_HUMAN
1-15
15
0
-
-
1.6a
ENST00000280154
6a
ENSE00001380538
chr10:
112640991-112641293
303
PDCD4_HUMAN
15-116
102
0
-
-
1.7
ENST00000280154
7
ENSE00000995567
chr10:
112642761-112642855
95
PDCD4_HUMAN
116-147
32
0
-
-
1.8c
ENST00000280154
8c
ENSE00001094657
chr10:
112645011-112645124
114
PDCD4_HUMAN
148-185
38
0
-
-
1.9e
ENST00000280154
9e
ENSE00002200197
chr10:
112647423-112647644
222
PDCD4_HUMAN
186-259
74
0
-
-
1.10
ENST00000280154
10
ENSE00001788034
chr10:
112649291-112649388
98
PDCD4_HUMAN
260-292
33
0
-
-
1.11a
ENST00000280154
11a
ENSE00001772839
chr10:
112650314-112650428
115
PDCD4_HUMAN
292-330
39
1
A:320-330 (gaps)
15
1.12b
ENST00000280154
12b
ENSE00001599108
chr10:
112653849-112653956
108
PDCD4_HUMAN
331-366
36
1
A:331-366
36
1.13
ENST00000280154
13
ENSE00001674744
chr10:
112654170-112654280
111
PDCD4_HUMAN
367-403
37
1
A:367-403
37
1.14b
ENST00000280154
14b
ENSE00001636249
chr10:
112655706-112655845
140
PDCD4_HUMAN
404-450
47
1
A:404-450
47
1.15e
ENST00000280154
15e
ENSE00001840051
chr10:
112657786-112659764
1979
PDCD4_HUMAN
450-469
20
1
A:450-456 (gaps)
10
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SCOP Domains
(1, 1)
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1a: SCOP_d2ggfa_ (A:)
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Class
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All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
MIF4G domain-like
(17)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2ggfa_
A:
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CATH Domains
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Chain A
Asymmetric Unit 1
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