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2GFJ
Asym. Unit
Info
Asym.Unit (99 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ZINC-BETA-LACTAMASE L1 FROM STENOTROPHOMONAS MALTOPHILIA (INHIBITOR 1)
Authors
:
L. Nauton, G. Garau, R. Kahn, O. Dideberg
Date
:
22 Mar 06 (Deposition) - 27 Mar 07 (Release) - 01 Jul 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Nauton, R. Kahn, G. Garau, J. F. Hernandez, O. Dideberg
Structural Insights Into The Design Of Inhibitors For The L1 Metallo-Beta-Lactamase From Stenotrophomonas Maltophilia.
J. Mol. Biol. V. 375 257 2008
(for further references see the
PDB file header
)
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
2a: 1,3-DIPHENYL-1H-PYRAZOLE-4,5-DICAR... (VIa)
2b: 1,3-DIPHENYL-1H-PYRAZOLE-4,5-DICAR... (VIb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
8
Ligand/Ion
SULFATE ION
2
VI
2
Ligand/Ion
1,3-DIPHENYL-1H-PYRAZOLE-4,5-DICARBOXYLIC ACID
3
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:116 , HIS A:118 , HIS A:196 , ZN A:402 , VI A:1410
BINDING SITE FOR RESIDUE ZN A 401
02
AC2
SOFTWARE
ASP A:120 , HIS A:121 , HIS A:263 , ZN A:401 , VI A:1410 , HOH A:1470
BINDING SITE FOR RESIDUE ZN A 402
03
AC3
SOFTWARE
HIS B:116 , HIS B:118 , HIS B:196 , ZN B:402 , VI B:2410
BINDING SITE FOR RESIDUE ZN B 401
04
AC4
SOFTWARE
ASP B:120 , HIS B:121 , HIS B:263 , ZN B:401 , VI B:2410
BINDING SITE FOR RESIDUE ZN B 402
05
AC5
SOFTWARE
ARG A:252 , LYS A:297 , ARG B:209 , ALA B:275 , ALA B:289 , GLY B:290 , ALA B:291 , HOH B:2569
BINDING SITE FOR RESIDUE SO4 B 1001
06
AC6
SOFTWARE
ARG A:172 , VAL A:179 , ILE A:180 , THR A:181 , SO4 A:1008
BINDING SITE FOR RESIDUE SO4 A 1002
07
AC7
SOFTWARE
ARG A:209 , ALA A:275 , ALA A:289 , GLY A:290 , ALA A:291 , HOH A:1602 , HOH A:1615 , ARG B:252 , LYS B:297
BINDING SITE FOR RESIDUE SO4 A 1003
08
AC8
SOFTWARE
ARG B:102 , GLY B:211 , HOH B:2624
BINDING SITE FOR RESIDUE SO4 B 1004
09
AC9
SOFTWARE
ARG B:172 , VAL B:179 , ILE B:180 , THR B:181 , HOH B:2494 , HOH B:2604
BINDING SITE FOR RESIDUE SO4 B 1005
10
BC1
SOFTWARE
ARG A:252 , ARG B:209
BINDING SITE FOR RESIDUE SO4 B 1006
11
BC2
SOFTWARE
ARG A:102 , HOH A:1524 , HOH A:1557
BINDING SITE FOR RESIDUE SO4 A 1007
12
BC3
SOFTWARE
ARG A:110 , ARG A:172 , ILE A:180 , THR A:181 , VAL A:182 , SO4 A:1002
BINDING SITE FOR RESIDUE SO4 A 1008
13
BC4
SOFTWARE
TRP A:39 , HIS A:116 , HIS A:118 , ASP A:120 , HIS A:121 , ILE A:162 , HIS A:196 , SER A:225 , PRO A:227 , HIS A:263 , ZN A:401 , ZN A:402 , HOH A:1470
BINDING SITE FOR RESIDUE VI A 1410
14
BC5
SOFTWARE
TRP B:39 , HIS B:116 , HIS B:118 , ASP B:120 , HIS B:121 , ILE B:162 , HIS B:196 , SER B:225 , PRO B:227 , HIS B:263 , ZN B:401 , ZN B:402
BINDING SITE FOR RESIDUE VI B 2410
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_B_1 (A:113-133,B:113-133)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_B_1
PS00743
Beta-lactamases class B signature 1.
BLA1_STEMA
102-122
2
A:113-133
B:113-133
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2gfja_ (A:)
1b: SCOP_d2gfjb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
Zn metallo-beta-lactamase
(93)
Protein domain
:
Zn metallo-beta-lactamase
(63)
Xanthomonas maltophilia [TaxId: 40324]
(12)
1a
d2gfja_
A:
1b
d2gfjb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2gfjA00 (A:24-317)
1b: CATH_2gfjB00 (B:24-317)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Metallo-beta-lactamase; Chain A
(92)
Homologous Superfamily
:
Metallo-beta-lactamase, chain A
(92)
Stenotrophomonas maltophilia. Organism_taxid: 40324. Strain: iid 1275.
(10)
1a
2gfjA00
A:24-317
1b
2gfjB00
B:24-317
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Pfam Domains
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Asym.Unit (99 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Biol.Unit 2 (48 KB)
Header - Biol.Unit 2
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