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2GER
Asym. Unit
Info
Asym.Unit (226 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (47 KB)
Biol.Unit 3 (47 KB)
Biol.Unit 4 (47 KB)
Biol.Unit 5 (47 KB)
Biol.Unit 6 (91 KB)
Biol.Unit 7 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE AND OXIDATIVE MECHANISM OF HUMAN PYRROLINE-5-CARBOXYLATE REDUCTASE
Authors
:
Z. Meng, Z. Lou, Z. Liu, Z. Rao
Date
:
20 Mar 06 (Deposition) - 19 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: D,E (1x)
Biol. Unit 7: A,C (1x)
Keywords
:
Crystal Structure, Oxidative Mechanism Of Human Pyrroline-5- Carboxylate, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Meng, Z. Lou, Z. Liu, M. Li, X. Zhao, M. Bartlam, Z. Rao
Crystal Structure Of Human Pyrroline-5-Carboxylate Reductas
J. Mol. Biol. V. 359 1364 2006
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(10, 50)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_059068 (R119G, chain A/B/C/D/E, )
02: VAR_059069 (R119H, chain A/B/C/D/E, )
03: VAR_059070 (A179T, chain A/B/C/D/E, )
04: VAR_059071 (A189V, chain A/B/C/D/E, )
05: VAR_059072 (G206R, chain A/B/C/D/E, )
06: VAR_059073 (G206W, chain A/B/C/D/E, )
07: VAR_067600 (G248E, chain A/B/C/D/E, )
08: VAR_059074 (R251H, chain A/B/C/D/E, )
09: VAR_059075 (A257T, chain A/B/C/D/E, )
10: VAR_059076 (R266Q, chain A/B/C/D/E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_059068
R
119
G
P5CR1_HUMAN
Disease (ARCL2B)
---
A/B/C/D/E
R
119
G
02
UniProt
VAR_059069
R
119
H
P5CR1_HUMAN
Disease (ARCL2B)
121918377
A/B/C/D/E
R
119
H
03
UniProt
VAR_059070
A
179
T
P5CR1_HUMAN
Disease (ARCL2B)
---
A/B/C/D/E
A
179
T
04
UniProt
VAR_059071
A
189
V
P5CR1_HUMAN
Polymorphism
---
A/B/C/D/E
A
189
V
05
UniProt
VAR_059072
G
206
R
P5CR1_HUMAN
Disease (ARCL2B)
121918375
A/B/C/D/E
G
206
R
06
UniProt
VAR_059073
G
206
W
P5CR1_HUMAN
Disease (ARCL2B)
---
A/B/C/D/E
G
206
W
07
UniProt
VAR_067600
G
248
E
P5CR1_HUMAN
Disease (ARCL3B)
281875319
A/B/C/D/E
G
248
E
08
UniProt
VAR_059074
R
251
H
P5CR1_HUMAN
Disease (ARCL3B)
---
A/B/C/D/E
R
251
H
09
UniProt
VAR_059075
A
257
T
P5CR1_HUMAN
Disease (ARCL3B)
281875318
A/B/C/D/E
A
257
T
10
UniProt
VAR_059076
R
266
Q
P5CR1_HUMAN
Disease (ARCL2B)
---
A/B/C/D/E
R
266
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: P5CR (A:224-246,B:224-246,C:224-246,D:22...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
P5CR
PS00521
Delta 1-pyrroline-5-carboxylate reductase signature.
P5CR1_HUMAN
224-246
5
A:224-246
B:224-246
C:224-246
D:224-246
E:224-246
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Exons
(7, 35)
Info
All Exons
Exon 1.3a (A:1-23 | B:1-23 | C:1-23 | D:1-23 ...)
Exon 1.4 (A:23-46 | B:23-46 | C:23-46 | D:23...)
Exon 1.5 (A:47-106 | B:47-106 (gaps) | C:47-...)
Exon 1.6 (A:107-180 | B:107-180 | C:107-180 ...)
Exon 1.7 (A:181-211 | B:181-211 | C:181-211 ...)
Exon 1.8b (A:212-266 | B:212-266 | C:212-266 ...)
Exon 1.9b (A:266-275 | B:266-275 | C:266-275 ...)
View:
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8b
7: Boundary 1.8b/1.9b
8: Boundary 1.9b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000329875
3a
ENSE00001511592
chr17:
79894968-79894624
345
P5CR1_HUMAN
1-23
23
5
A:1-23
B:1-23
C:1-23
D:1-23
E:1-23
23
23
23
23
23
1.4
ENST00000329875
4
ENSE00001321886
chr17:
79894069-79893999
71
P5CR1_HUMAN
23-46
24
5
A:23-46
B:23-46
C:23-46
D:23-46
E:23-46
24
24
24
24
24
1.5
ENST00000329875
5
ENSE00001609318
chr17:
79893392-79893213
180
P5CR1_HUMAN
47-106
60
5
A:47-106
B:47-106 (gaps)
C:47-106
D:47-106
E:47-106
60
60
60
60
60
1.6
ENST00000329875
6
ENSE00001295081
chr17:
79893023-79892802
222
P5CR1_HUMAN
107-180
74
5
A:107-180
B:107-180
C:107-180
D:107-180
E:107-180
74
74
74
74
74
1.7
ENST00000329875
7
ENSE00001652123
chr17:
79892621-79892529
93
P5CR1_HUMAN
181-211
31
5
A:181-211
B:181-211
C:181-211
D:181-211
E:181-211
31
31
31
31
31
1.8b
ENST00000329875
8b
ENSE00001731739
chr17:
79892365-79892202
164
P5CR1_HUMAN
212-266
55
5
A:212-266
B:212-266
C:212-266
D:212-266
E:212-266
55
55
55
55
55
1.9b
ENST00000329875
9b
ENSE00001665866
chr17:
79891252-79890269
984
P5CR1_HUMAN
266-319
54
5
A:266-275
B:266-275
C:266-275
D:266-275
E:266-275
10
10
10
10
10
[
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SCOP Domains
(2, 10)
Info
All SCOP Domains
1a: SCOP_d2gera2 (A:165-275)
1b: SCOP_d2gerb2 (B:165-275)
1c: SCOP_d2gerc2 (C:165-275)
1d: SCOP_d2gerd2 (D:165-275)
1e: SCOP_d2gere2 (E:165-275)
2a: SCOP_d2gera1 (A:-1-164)
2b: SCOP_d2gerd1 (D:-1-164)
2c: SCOP_d2gere1 (E:-1-164)
2d: SCOP_d2gerb1 (B:-1-164)
2e: SCOP_d2gerc1 (C:-1-164)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
automated matches
(50)
Protein domain
:
automated matches
(50)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d2gera2
A:165-275
1b
d2gerb2
B:165-275
1c
d2gerc2
C:165-275
1d
d2gerd2
D:165-275
1e
d2gere2
E:165-275
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Human (Homo sapiens) [TaxId: 9606]
(32)
2a
d2gera1
A:-1-164
2b
d2gerd1
D:-1-164
2c
d2gere1
E:-1-164
2d
d2gerb1
B:-1-164
2e
d2gerc1
C:-1-164
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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