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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
2GCO
Asym. Unit
Info
Asym.Unit (79 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN RHOC-GPPNHP COMPLEX
Authors
:
S. M. G. Dias, R. A. Cerione
Date
:
14 Mar 06 (Deposition) - 27 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gtp-Binding Protein, Gtpase, Signaling Protein, Signaling Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. M. G. Dias, R. A. Cerione
X-Ray Crystal Structures Reveal Two Activated States For Rhoc.
Biochemistry V. 46 6547 2007
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: S-OXY CYSTEINE (CSXa)
2a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSX
1
Mod. Amino Acid
S-OXY CYSTEINE
2
GNP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:19 , THR A:37 , GNP A:1001 , HOH A:1049 , HOH A:1080
BINDING SITE FOR RESIDUE MG A 1002
2
AC2
SOFTWARE
THR B:19 , THR B:37 , GNP B:1003 , HOH B:1027 , HOH B:1059
BINDING SITE FOR RESIDUE MG B 1004
3
AC3
SOFTWARE
GLY A:14 , ALA A:15 , CYS A:16 , GLY A:17 , LYS A:18 , THR A:19 , CYS A:20 , PHE A:30 , VAL A:35 , THR A:37 , GLY A:62 , LYS A:118 , ASP A:120 , LEU A:121 , SER A:160 , ALA A:161 , LYS A:162 , MG A:1002 , HOH A:1009 , HOH A:1019 , HOH A:1035 , HOH A:1049 , HOH A:1077 , HOH A:1080 , HOH A:1101 , HOH A:1218 , HOH A:1219 , HOH A:1226 , HOH A:1230
BINDING SITE FOR RESIDUE GNP A 1001
4
AC4
SOFTWARE
GLY B:14 , ALA B:15 , CYS B:16 , GLY B:17 , LYS B:18 , THR B:19 , CYS B:20 , PHE B:30 , THR B:37 , GLY B:62 , LYS B:118 , ASP B:120 , LEU B:121 , SER B:160 , ALA B:161 , LYS B:162 , MG B:1004 , HOH B:1010 , HOH B:1012 , HOH B:1027 , HOH B:1053 , HOH B:1059 , HOH B:1060 , HOH B:1065 , HOH B:1124 , HOH B:1127 , HOH B:1132 , HOH B:1176
BINDING SITE FOR RESIDUE GNP B 1003
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051974 (D120H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051974
D
120
H
RHOC_HUMAN
Polymorphism
11538959
A/B
D
120
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RHO (A:2-178,B:4-178)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RHOC_HUMAN
1-178
2
A:2-178
B:4-178
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Exons
(4, 8)
Info
All Exons
Exon 1.4a (A:-4-52 | B:-6-52 (gaps))
Exon 1.6b (A:53-93 | B:53-93)
Exon 1.6g (A:93-136 | B:93-136)
Exon 1.7k (A:137-180 | B:137-180)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.4a
2: Boundary 1.4a/1.6b
3: Boundary 1.6b/1.6g
4: Boundary 1.6g/1.7k
5: Boundary 1.7k/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000369642
1a
ENSE00001450517
chr1:
113250056-113249700
357
RHOC_HUMAN
-
0
0
-
-
1.4a
ENST00000369642
4a
ENSE00002194010
chr1:
113246428-113246266
163
RHOC_HUMAN
1-52
52
2
A:-4-52
B:-6-52 (gaps)
52
52
1.6b
ENST00000369642
6b
ENSE00001020610
chr1:
113245741-113245621
121
RHOC_HUMAN
53-93
41
2
A:53-93
B:53-93
41
41
1.6g
ENST00000369642
6g
ENSE00001683192
chr1:
113245315-113245185
131
RHOC_HUMAN
93-136
44
2
A:93-136
B:93-136
44
44
1.7k
ENST00000369642
7k
ENSE00001896032
chr1:
113244335-113243753
583
RHOC_HUMAN
137-193
57
2
A:137-180
B:137-180
44
44
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2gcoa_ (A:)
1b: SCOP_d2gcob_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
RhoC
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2gcoa_
A:
1b
d2gcob_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2gcoA01 (A:2-180)
1b: CATH_2gcoB01 (B:4-180)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2gcoA01
A:2-180
1b
2gcoB01
B:4-180
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Pfam Domains
(0, 0)
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Show PDB file:
Asym.Unit (79 KB)
Header - Asym.Unit
Biol.Unit 1 (39 KB)
Header - Biol.Unit 1
Biol.Unit 2 (37 KB)
Header - Biol.Unit 2
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