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2GBL
Asym. Unit
Info
Asym.Unit (496 KB)
Biol.Unit 1 (485 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FULL LENGTH CIRCADIAN CLOCK PROTEIN KAIC WITH PHOSPHORYLATION SITES
Authors
:
R. Pattanayek, D. R. Williams, S. Pattanayek, Y. Xu, T. Mori, C. H. Johns P. L. Stewart, M. Egli
Date
:
10 Mar 06 (Deposition) - 23 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Circadian Clock Protein Homohexamer, Circadian, Kaia, Kaib, Kaic, Hexamer, , Circadian Clock Protein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Pattanayek, D. R. Williams, S. Pattanayek, Y. Xu, T. Mori, C. H. Johnson, P. L. Stewart, M. Egli
Analysis Of Kaia-Kaic Protein Interactions In The Cyano-Bacterial Circadian Clock Using Hybrid Structural Methods.
Embo J. V. 25 2017 2006
[
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Hetero Components
(4, 28)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
1e: ADENOSINE-5'-TRIPHOSPHATE (ATPe)
1f: ADENOSINE-5'-TRIPHOSPHATE (ATPf)
1g: ADENOSINE-5'-TRIPHOSPHATE (ATPg)
1h: ADENOSINE-5'-TRIPHOSPHATE (ATPh)
1i: ADENOSINE-5'-TRIPHOSPHATE (ATPi)
1j: ADENOSINE-5'-TRIPHOSPHATE (ATPj)
1k: ADENOSINE-5'-TRIPHOSPHATE (ATPk)
1l: ADENOSINE-5'-TRIPHOSPHATE (ATPl)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
3a: PHOSPHOSERINE (SEPa)
3b: PHOSPHOSERINE (SEPb)
3c: PHOSPHOSERINE (SEPc)
3d: PHOSPHOSERINE (SEPd)
4a: PHOSPHOTHREONINE (TPOa)
4b: PHOSPHOTHREONINE (TPOb)
4c: PHOSPHOTHREONINE (TPOc)
4d: PHOSPHOTHREONINE (TPOd)
4e: PHOSPHOTHREONINE (TPOe)
4f: PHOSPHOTHREONINE (TPOf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
12
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
MG
6
Ligand/Ion
MAGNESIUM ION
3
SEP
4
Mod. Amino Acid
PHOSPHOSERINE
4
TPO
6
Mod. Amino Acid
PHOSPHOTHREONINE
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:295 , GLU A:318 , GLU A:319 , ATP A:901 , ARG B:459
BINDING SITE FOR RESIDUE MG A 801
02
AC2
SOFTWARE
GLU B:318 , THR B:415 , ATP B:901
BINDING SITE FOR RESIDUE MG B 802
03
AC3
SOFTWARE
THR C:295 , GLU C:319 , ATP C:901
BINDING SITE FOR RESIDUE MG C 803
04
AC4
SOFTWARE
THR D:295 , GLU D:319 , ATP D:901
BINDING SITE FOR RESIDUE MG D 804
05
AC5
SOFTWARE
THR E:295 , GLU E:318 , GLU E:319 , ATP E:901
BINDING SITE FOR RESIDUE MG E 805
06
AC6
SOFTWARE
ARG A:459 , THR F:295 , GLU F:318 , GLU F:319 , ATP F:901
BINDING SITE FOR RESIDUE MG F 806
07
AC7
SOFTWARE
THR A:290 , GLY A:291 , THR A:292 , GLY A:293 , LYS A:294 , THR A:295 , LEU A:296 , TRP A:331 , ARG A:451 , ILE A:472 , MG A:801 , LYS B:457 , MET B:458 , ARG B:459 , GLY B:460 , SER B:461 , TRP B:462 , HIS B:463 , LYS B:465
BINDING SITE FOR RESIDUE ATP A 901
08
AC8
SOFTWARE
GLY A:49 , THR A:50 , GLY A:51 , LYS A:52 , THR A:53 , LEU A:54 , SER A:89 , PHE A:90 , ILE A:239 , THR A:240 , ASP A:241 , LYS B:224 , LEU B:225 , ARG B:226 , THR B:228 , SER B:229 , HIS B:230 , LYS B:232
BINDING SITE FOR RESIDUE ATP A 903
09
AC9
SOFTWARE
THR B:290 , GLY B:291 , THR B:292 , GLY B:293 , LYS B:294 , THR B:295 , LEU B:296 , GLU B:318 , SER B:330 , TRP B:331 , ARG B:451 , ILE B:472 , MG B:802 , LYS C:457 , MET C:458 , ARG C:459 , SER C:461 , TRP C:462 , HIS C:463 , LYS C:465
BINDING SITE FOR RESIDUE ATP B 901
10
BC1
SOFTWARE
GLY B:49 , THR B:50 , GLY B:51 , LYS B:52 , THR B:53 , LEU B:54 , SER B:89 , PHE B:90 , ILE B:239 , THR B:240 , ASP B:241 , LYS C:224 , LEU C:225 , ARG C:226 , THR C:228 , SER C:229 , HIS C:230 , LYS C:232
BINDING SITE FOR RESIDUE ATP B 903
11
BC2
SOFTWARE
THR C:290 , GLY C:291 , THR C:292 , GLY C:293 , LYS C:294 , THR C:295 , LEU C:296 , GLU C:318 , SER C:330 , TRP C:331 , ARG C:451 , ILE C:472 , MG C:803 , LYS D:457 , MET D:458 , ARG D:459 , SER D:461 , TRP D:462 , HIS D:463 , LYS D:465 , HOH D:909
BINDING SITE FOR RESIDUE ATP C 901
12
BC3
SOFTWARE
GLY C:49 , THR C:50 , GLY C:51 , LYS C:52 , THR C:53 , LEU C:54 , SER C:89 , PHE C:90 , ILE C:239 , THR C:240 , ASP C:241 , PHE D:199 , LYS D:224 , LEU D:225 , ARG D:226 , GLY D:227 , THR D:228 , SER D:229 , HIS D:230 , LYS D:232
BINDING SITE FOR RESIDUE ATP C 903
13
BC4
SOFTWARE
THR D:290 , GLY D:291 , THR D:292 , GLY D:293 , LYS D:294 , THR D:295 , LEU D:296 , GLU D:318 , SER D:330 , TRP D:331 , ARG D:451 , ILE D:472 , MG D:804 , LYS E:457 , MET E:458 , ARG E:459 , SER E:461 , TRP E:462 , HIS E:463 , LYS E:465
BINDING SITE FOR RESIDUE ATP D 901
14
BC5
SOFTWARE
GLY D:49 , THR D:50 , GLY D:51 , LYS D:52 , THR D:53 , LEU D:54 , SER D:89 , PHE D:90 , ARG D:218 , ILE D:239 , ASP D:241 , PHE E:199 , LYS E:224 , LEU E:225 , ARG E:226 , THR E:228 , SER E:229 , HIS E:230
BINDING SITE FOR RESIDUE ATP D 903
15
BC6
SOFTWARE
THR E:290 , GLY E:291 , THR E:292 , GLY E:293 , LYS E:294 , THR E:295 , LEU E:296 , TRP E:331 , ARG E:451 , ILE E:472 , MG E:805 , LYS F:457 , MET F:458 , ARG F:459 , SER F:461 , TRP F:462 , HIS F:463 , LYS F:465
BINDING SITE FOR RESIDUE ATP E 901
16
BC7
SOFTWARE
GLY E:49 , THR E:50 , GLY E:51 , LYS E:52 , THR E:53 , LEU E:54 , SER E:89 , PHE E:90 , ILE E:239 , ASP E:241 , PHE F:199 , LYS F:224 , LEU F:225 , ARG F:226 , THR F:228 , SER F:229 , HIS F:230 , LYS F:232
BINDING SITE FOR RESIDUE ATP E 903
17
BC8
SOFTWARE
LYS A:457 , MET A:458 , ARG A:459 , SER A:461 , TRP A:462 , HIS A:463 , LYS A:465 , THR F:290 , GLY F:291 , THR F:292 , GLY F:293 , LYS F:294 , THR F:295 , LEU F:296 , GLU F:318 , SER F:330 , TRP F:331 , ARG F:451 , ILE F:472 , SER F:473 , MG F:806
BINDING SITE FOR RESIDUE ATP F 901
18
BC9
SOFTWARE
LYS A:224 , LEU A:225 , ARG A:226 , THR A:228 , HIS A:230 , GLY F:49 , THR F:50 , GLY F:51 , LYS F:52 , THR F:53 , LEU F:54 , SER F:89 , PHE F:90 , ILE F:239 , THR F:240 , ASP F:241
BINDING SITE FOR RESIDUE ATP F 903
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: KAIC (A:19-260,B:19-260,C:19-260,D:19-26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KAIC
PS51146
KaiC domain profile.
KAIC_SYNE7
19-260
261-493
12
A:19-260
B:19-260
C:19-260
D:19-260
E:19-260
F:19-260
A:261-493
B:261-493
C:261-493
D:261-493
E:261-493
F:261-493
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2gbla1 (A:14-255)
1b: SCOP_d2gbla2 (A:256-497)
1c: SCOP_d2gblb1 (B:14-255)
1d: SCOP_d2gblb2 (B:256-497)
1e: SCOP_d2gblc1 (C:14-255)
1f: SCOP_d2gblc2 (C:256-497)
1g: SCOP_d2gbld1 (D:14-255)
1h: SCOP_d2gbld2 (D:256-497)
1i: SCOP_d2gble1 (E:14-255)
1j: SCOP_d2gble2 (E:256-497)
1k: SCOP_d2gblf1 (F:14-255)
1l: SCOP_d2gblf2 (F:256-497)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
Circadian clock protein KaiC
(3)
Synechococcus elongatus PCC 7942 [TaxId: 1140]
(3)
1a
d2gbla1
A:14-255
1b
d2gbla2
A:256-497
1c
d2gblb1
B:14-255
1d
d2gblb2
B:256-497
1e
d2gblc1
C:14-255
1f
d2gblc2
C:256-497
1g
d2gbld1
D:14-255
1h
d2gbld2
D:256-497
1i
d2gble1
E:14-255
1j
d2gble2
E:256-497
1k
d2gblf1
F:14-255
1l
d2gblf2
F:256-497
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2gblC01 (C:14-249)
1b: CATH_2gblD02 (D:250-498)
1c: CATH_2gblC02 (C:250-501)
1d: CATH_2gblD01 (D:14-249)
View:
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(
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(
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Architectures
(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Synechococcus elongatus pcc 7942. Organism_taxid: 1140. Strain: pcc 7942.
(2)
1a
2gblC01
C:14-249
1b
2gblD02
D:250-498
1c
2gblC02
C:250-501
1d
2gblD01
D:14-249
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
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Protein & NOT PROSITE
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Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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