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Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
MONOMERIC SARCOSINE OXIDASE: STRUCTURE OF A COVALENTLY FLAVINYLATED AMINE OXIDIZING ENZYME
Authors
:
P. Trickey, M. A. Wagner, M. S. Jorns, F. S. Mathews
Date
:
09 Mar 06 (Deposition) - 21 Mar 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Flavoprotein Oxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
P. Trickey, M. A. Wagner, M. S. Jorns, F. S. Mathews
Monomeric Sarcosine Oxidase: Structure Of A Covalently Flavinylated Amine Oxidizing Enzyme
Structure V. 7 331 1999
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:81 , ASN A:151 , ARG A:154 , HOH A:840
BINDING SITE FOR RESIDUE PO4 A 801
2
AC2
SOFTWARE
THR A:2 , LYS A:28 , SER B:1 , HOH B:1018 , HOH B:1064 , HOH B:1127
BINDING SITE FOR RESIDUE PO4 B 802
3
AC3
SOFTWARE
THR A:318 , GLY A:344 , FAD A:400 , HOH A:1109
BINDING SITE FOR RESIDUE CL A 803
4
AC4
SOFTWARE
HIS B:81 , ASN B:151 , ARG B:154 , HOH B:807 , HOH B:965
BINDING SITE FOR RESIDUE PO4 B 804
5
AC5
SOFTWARE
HIS B:53 , LEU B:113 , THR B:114 , VAL B:115 , GLU B:141 , PRO B:142 , ASN B:143 , SER B:144 , HOH B:917 , HOH B:1129
BINDING SITE FOR RESIDUE PO4 B 805
6
AC6
SOFTWARE
TYR B:317 , THR B:318 , GLY B:344 , FAD B:400 , HOH B:1099
BINDING SITE FOR RESIDUE CL B 806
7
AC7
SOFTWARE
GLY A:10 , GLY A:12 , SER A:13 , MET A:14 , VAL A:32 , ASP A:33 , ALA A:34 , PHE A:35 , HIS A:39 , GLY A:42 , SER A:43 , HIS A:44 , ARG A:49 , ILE A:50 , THR A:171 , ARG A:172 , VAL A:173 , SER A:200 , MET A:201 , GLY A:202 , TRP A:204 , LEU A:208 , TYR A:254 , CYS A:315 , MET A:316 , TYR A:317 , PHE A:342 , GLY A:344 , HIS A:345 , GLY A:346 , PHE A:347 , LYS A:348 , CL A:803 , HOH A:809 , HOH A:824 , HOH A:825 , HOH A:873 , HOH A:894 , HOH A:896
BINDING SITE FOR RESIDUE FAD A 400
8
AC8
SOFTWARE
GLY B:10 , GLY B:12 , SER B:13 , MET B:14 , VAL B:32 , ASP B:33 , ALA B:34 , PHE B:35 , HIS B:39 , GLY B:42 , SER B:43 , HIS B:44 , ARG B:49 , ILE B:50 , THR B:171 , ARG B:172 , VAL B:173 , SER B:200 , MET B:201 , GLY B:202 , TRP B:204 , LEU B:208 , TYR B:254 , CYS B:315 , MET B:316 , TYR B:317 , PHE B:342 , GLY B:344 , HIS B:345 , GLY B:346 , PHE B:347 , LYS B:348 , CL B:806 , HOH B:812 , HOH B:814 , HOH B:825 , HOH B:836 , HOH B:838 , HOH B:998
BINDING SITE FOR RESIDUE FAD B 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2gb0a2 (A:218-321)
1b: SCOP_d2gb0b2 (B:218-321)
2a: SCOP_d2gb0a1 (A:1-217,A:322-387)
2b: SCOP_d2gb0b1 (B:1-217,B:322-389)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
D-aminoacid oxidase-like
(29)
Protein domain
:
Sarcosine oxidase
(16)
Bacillus sp., strain b0618 [TaxId: 1409]
(16)
1a
d2gb0a2
A:218-321
1b
d2gb0b2
B:218-321
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Sarcosine oxidase
(16)
Bacillus sp., strain b0618 [TaxId: 1409]
(16)
2a
d2gb0a1
A:1-217,A:322-387
2b
d2gb0b1
B:1-217,B:322-389
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2gb0A02 (A:60-145,A:213-321)
1b: CATH_2gb0B02 (B:60-145,B:213-321)
2a: CATH_2gb0B01 (B:1-59,B:149-212,B:326-389)
2b: CATH_2gb0A01 (A:1-59,A:149-212,A:326-387)
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Organisms
(
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)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-Amino Acid Oxidase; Chain A, domain 2
(80)
Homologous Superfamily
:
D-Amino Acid Oxidase, subunit A, domain 2
(80)
B-0618 (Bacillus sp)
(11)
1a
2gb0A02
A:60-145,A:213-321
1b
2gb0B02
B:60-145,B:213-321
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
B-0618 (Bacillus sp)
(11)
2a
2gb0B01
B:1-59,B:149-212,B:326-389
2b
2gb0A01
A:1-59,A:149-212,A:326-387
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Pfam Domains
(0, 0)
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (145 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
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