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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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2GA4
Asym. Unit
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Asym.Unit (120 KB)
Biol.Unit 1 (115 KB)
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(1)
Title
:
STX2 WITH ADENINE
Authors
:
M. E. Fraser
Date
:
07 Mar 06 (Deposition) - 11 Jul 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Ab5-Toxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. E. Fraser, M. M. Cherney, P. Marcato, G. L. Mulvey, G. D. Armstrong, M. N. James
Binding Of Adenine To Stx2, The Protein Toxin From Escherichia Coli O157:H7.
Acta Crystallogr. , Sect. F V. 62 627 2006
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONA... (1PSa)
1b: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONA... (1PSb)
1c: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONA... (1PSc)
1d: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONA... (1PSd)
2a: ADENINE (ADEa)
3a: 1,2-ETHANEDIOL (EDOa)
4a: FORMIC ACID (FMTa)
4b: FORMIC ACID (FMTb)
4c: FORMIC ACID (FMTc)
4d: FORMIC ACID (FMTd)
4e: FORMIC ACID (FMTe)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
5d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PS
4
Ligand/Ion
3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
2
ADE
1
Ligand/Ion
ADENINE
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
FMT
5
Ligand/Ion
FORMIC ACID
5
NA
5
Ligand/Ion
SODIUM ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER F:53 , THR F:55 , SER F:60 , GLY F:61
BINDING SITE FOR RESIDUE NA F 711
02
AC2
SOFTWARE
SER B:53 , THR B:55 , SER B:60 , GLY B:61
BINDING SITE FOR RESIDUE NA B 712
03
AC3
SOFTWARE
ARG A:266 , SER A:278 , ASN A:279 , FMT A:709 , HOH A:838 , HOH C:729
BINDING SITE FOR RESIDUE NA A 713
04
AC4
SOFTWARE
THR A:22 , SER A:25 , HOH A:767 , HOH A:791 , HOH A:895 , HOH A:961
BINDING SITE FOR RESIDUE NA A 714
05
AC5
SOFTWARE
SER A:15 , SER A:19 , HOH A:825 , HOH A:832 , HOH A:943
BINDING SITE FOR RESIDUE NA A 715
06
AC6
SOFTWARE
LEU A:76 , TYR A:77 , VAL A:78 , SER A:112 , TYR A:114 , VAL A:162 , ALA A:166 , ARG A:170 , HOH A:830
BINDING SITE FOR RESIDUE ADE A 701
07
AC7
SOFTWARE
ASN F:14 , ASP F:16 , THR F:18 , TRP F:29 , HOH F:722 , HOH F:762
BINDING SITE FOR RESIDUE 1PS F 702
08
AC8
SOFTWARE
ASN B:14 , GLU B:15 , ASP B:16 , THR B:18 , TRP B:29 , HOH B:714 , HOH B:760
BINDING SITE FOR RESIDUE 1PS B 703
09
AC9
SOFTWARE
ASN C:14 , ASP C:16 , THR C:18 , TRP C:29 , HOH C:742 , HOH C:750 , HOH C:766 , SER D:58
BINDING SITE FOR RESIDUE 1PS C 704
10
BC1
SOFTWARE
SER C:58 , ASN D:14 , GLU D:15 , ASP D:16 , THR D:18 , TRP D:29 , FMT D:708 , HOH D:728 , HOH D:745 , HOH D:773
BINDING SITE FOR RESIDUE 1PS D 705
11
BC2
SOFTWARE
SER A:229 , PHE A:291 , TYR B:13 , SER F:31 , ARG F:32 , TRP F:33 , ASN F:34
BINDING SITE FOR RESIDUE EDO F 716
12
BC3
SOFTWARE
GLN A:175 , ARG A:176 , ARG A:179 , HOH A:751
BINDING SITE FOR RESIDUE FMT A 706
13
BC4
SOFTWARE
ARG A:179 , THR A:294 , HOH A:723 , ARG E:32 , TRP E:33 , ASN E:34 , HOH E:721
BINDING SITE FOR RESIDUE FMT E 707
14
BC5
SOFTWARE
THR D:20 , GLY D:59 , 1PS D:705 , HOH D:746 , HOH D:748
BINDING SITE FOR RESIDUE FMT D 708
15
BC6
SOFTWARE
ASN A:207 , GLN A:261 , THR A:263 , ASP A:265 , ARG A:266 , PRO A:267 , NA A:713 , HOH A:760 , HOH C:729
BINDING SITE FOR RESIDUE FMT A 709
16
BC7
SOFTWARE
ARG C:32 , TRP C:33 , HOH C:730 , HOH C:734 , HOH D:744
BINDING SITE FOR RESIDUE FMT C 710
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_STXA_BP933_002 (T4M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_STXA_BP933_002
*
T
26
M
STXA_BP933
---
---
A
T
4
M
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SHIGA_RICIN (A:162-178)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SHIGA_RICIN
PS00275
Shiga/ricin ribosomal inactivating toxins active site signature.
STXA_BP933
184-200
1
A:162-178
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2ga4b_ (B:)
1b: SCOP_d2ga4c_ (C:)
1c: SCOP_d2ga4d_ (D:)
1d: SCOP_d2ga4e_ (E:)
1e: SCOP_d2ga4f_ (F:)
2a: SCOP_d2ga4a_ (A:)
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(
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(
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Bacterial AB5 toxins, B-subunits
(85)
Protein domain
:
Verotoxin-1/shiga-toxin, B-pentamer
(19)
Enterobacteria phage [TaxId: 10730]
(1)
1a
d2ga4b_
B:
1b
d2ga4c_
C:
1c
d2ga4d_
D:
1d
d2ga4e_
E:
1e
d2ga4f_
F:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ribosome inactivating proteins (RIP)
(180)
Superfamily
:
Ribosome inactivating proteins (RIP)
(180)
Family
:
Shiga toxin, A-chain
(5)
Protein domain
:
Shiga toxin, A-chain
(5)
Enterobacteria phage [TaxId: 10730]
(1)
2a
d2ga4a_
A:
[
close SCOP info
]
CATH Domains
(3, 7)
Info
all CATH domains
1a: CATH_2ga4A01 (A:1-170)
2a: CATH_2ga4A02 (A:171-297)
3a: CATH_2ga4B00 (B:1-70)
3b: CATH_2ga4C00 (C:1-70)
3c: CATH_2ga4D00 (D:1-70)
3d: CATH_2ga4E00 (E:1-70)
3e: CATH_2ga4F00 (F:1-70)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Ricin (A subunit); domain 1
(112)
Homologous Superfamily
:
Ricin (A subunit), domain 1
(112)
Enterobacteria phage 933w. Organism_taxid: 10730. Strain: c600 933w.
(1)
1a
2ga4A01
A:1-170
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Ricin (A Subunit), domain 2
(112)
Homologous Superfamily
:
Ricin (A Subunit), domain 2
(112)
Enterobacteria phage 933w. Organism_taxid: 10730. Strain: c600 933w.
(1)
2a
2ga4A02
A:171-297
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.70, no name defined]
(18)
Enterobacteria phage 933w. Organism_taxid: 10730. Strain: c600 933w.
(1)
3a
2ga4B00
B:1-70
3b
2ga4C00
C:1-70
3c
2ga4D00
D:1-70
3d
2ga4E00
E:1-70
3e
2ga4F00
F:1-70
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
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Protein & NOT PROSITE
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Chain F
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