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2G9N
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (39 KB)
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(1)
Title
:
STRUCTURE OF THE DEAD DOMAIN OF HUMAN EUKARYOTIC INITIATION FACTOR 4A, EIF4A
Authors
:
M. Hogbom, D. Ogg, C. Arrowsmith, H. Berglund, R. Collins, A. Edwards, M S. Flodin, A. Flores, S. Graslund, B. M. Hallberg, M. Hammarstrom, T. K P. Nilsson-Ehle, P. Nordlund, T. Nyman, C. Persson, J. Sagemark, P. St M. Sundstrom, A. G. Thorsell, J. Uppenberg, S. Van Den Berg, J. Weige L. Holmberg-Schiavone, Structural Genomics Consortium (Sgc)
Date
:
07 Mar 06 (Deposition) - 14 Mar 06 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Dead-Box, Helicase, Ddx2A, Rna, Structural Genomics, Structural Genomics Consortium, Sgc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Schutz, T. Karlberg, S. Van Den Berg, R. Collins, L. Lehtio, M. Hogbom, L. Holmberg-Schiavone, W. Tempel, H. W. Park, M. Hammarstrom, M. Moche, A. G. Thorsell, H. Schuler
Comparative Structural Analysis Of Human Dead-Box Rna Helicases.
Plos One V. 5 12791 2010
[
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Hetero Components
(1, 27)
Info
All Hetero Components
1a: N-DIMETHYL-LYSINE (MLYa)
1aa: N-DIMETHYL-LYSINE (MLYaa)
1b: N-DIMETHYL-LYSINE (MLYb)
1c: N-DIMETHYL-LYSINE (MLYc)
1d: N-DIMETHYL-LYSINE (MLYd)
1e: N-DIMETHYL-LYSINE (MLYe)
1f: N-DIMETHYL-LYSINE (MLYf)
1g: N-DIMETHYL-LYSINE (MLYg)
1h: N-DIMETHYL-LYSINE (MLYh)
1i: N-DIMETHYL-LYSINE (MLYi)
1j: N-DIMETHYL-LYSINE (MLYj)
1k: N-DIMETHYL-LYSINE (MLYk)
1l: N-DIMETHYL-LYSINE (MLYl)
1m: N-DIMETHYL-LYSINE (MLYm)
1n: N-DIMETHYL-LYSINE (MLYn)
1o: N-DIMETHYL-LYSINE (MLYo)
1p: N-DIMETHYL-LYSINE (MLYp)
1q: N-DIMETHYL-LYSINE (MLYq)
1r: N-DIMETHYL-LYSINE (MLYr)
1s: N-DIMETHYL-LYSINE (MLYs)
1t: N-DIMETHYL-LYSINE (MLYt)
1u: N-DIMETHYL-LYSINE (MLYu)
1v: N-DIMETHYL-LYSINE (MLYv)
1w: N-DIMETHYL-LYSINE (MLYw)
1x: N-DIMETHYL-LYSINE (MLYx)
1y: N-DIMETHYL-LYSINE (MLYy)
1z: N-DIMETHYL-LYSINE (MLYz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MLY
27
Mod. Amino Acid
N-DIMETHYL-LYSINE
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: Q_MOTIF (A:32-60,B:32-60)
2: DEAD_ATP_HELICASE (A:180-188,B:180-188)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
Q_MOTIF
PS51195
DEAD-box RNA helicase Q motif profile.
IF4A1_HUMAN
32-60
2
A:32-60
B:32-60
2
DEAD_ATP_HELICASE
PS00039
DEAD-box subfamily ATP-dependent helicases signature.
IF4A1_HUMAN
180-188
2
A:180-188
B:180-188
[
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Exons
(6, 12)
Info
All Exons
Exon 1.2 (A:21-24 | B:23-24)
Exon 1.3 (A:25-69 | B:25-69)
Exon 1.4a (A:69-115 | B:69-115)
Exon 1.5 (A:116-172 (gaps) | B:116-172)
Exon 1.6 (A:172-208 | B:172-208)
Exon 1.7 (A:209-238 | B:209-237)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4a
4: Boundary 1.4a/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000293831
1a
ENSE00001710114
chr17:
7476024-7476182
159
IF4A1_HUMAN
1-8
8
0
-
-
1.2
ENST00000293831
2
ENSE00001631751
chr17:
7477578-7477626
49
IF4A1_HUMAN
8-24
17
2
A:21-24
B:23-24
4
2
1.3
ENST00000293831
3
ENSE00001762686
chr17:
7477864-7477996
133
IF4A1_HUMAN
25-69
45
2
A:25-69
B:25-69
45
45
1.4a
ENST00000293831
4a
ENSE00001726391
chr17:
7478437-7478576
140
IF4A1_HUMAN
69-115
47
2
A:69-115
B:69-115
47
47
1.5
ENST00000293831
5
ENSE00001061690
chr17:
7479842-7480010
169
IF4A1_HUMAN
116-172
57
2
A:116-172 (gaps)
B:116-172
57
57
1.6
ENST00000293831
6
ENSE00001061689
chr17:
7480374-7480483
110
IF4A1_HUMAN
172-208
37
2
A:172-208
B:172-208
37
37
1.7
ENST00000293831
7
ENSE00001061692
chr17:
7480662-7480805
144
IF4A1_HUMAN
209-256
48
2
A:209-238
B:209-237
30
29
1.8
ENST00000293831
8
ENSE00001799518
chr17:
7480887-7481024
138
IF4A1_HUMAN
257-302
46
0
-
-
1.9
ENST00000293831
9
ENSE00001061685
chr17:
7481145-7481234
90
IF4A1_HUMAN
303-332
30
0
-
-
1.10
ENST00000293831
10
ENSE00001061694
chr17:
7481483-7481562
80
IF4A1_HUMAN
333-359
27
0
-
-
1.11
ENST00000293831
11
ENSE00001485271
chr17:
7481660-7482324
665
IF4A1_HUMAN
359-406
48
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2g9na1 (A:21-238)
1b: SCOP_d2g9nb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Tandem AAA-ATPase domain
(59)
Protein domain
:
Initiation factor 4a
(6)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2g9na1
A:21-238
1b
d2g9nb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2g9nA00 (A:21-236)
1b: CATH_2g9nB00 (B:23-236)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2g9nA00
A:21-236
1b
2g9nB00
B:23-236
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (84 KB)
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