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2G99
Asym. Unit
Info
Asym.Unit (100 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (50 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR THE SPECIFIC RECOGNITION OF METHYLATED HISTONE H3 LYSINE 4 BY THE WD-40 PROTEIN WDR5
Authors
:
J. Chai, Z. Han, H. Wang, Y. Shen
Date
:
06 Mar 06 (Deposition) - 06 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Wd40 Repeat Protein, Structural Protein/Dna Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Chai, Z. Han, H. Wang, Y. Shen
Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-DIMETHYL-LYSINE (MLYa)
1b: N-DIMETHYL-LYSINE (MLYb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MLY
2
Mod. Amino Acid
N-DIMETHYL-LYSINE
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: WD_REPEATS_1 (A:102-116,B:102-116|A:144-158,B:14...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
WDR5_HUMAN
102-116
144-158
186-200
274-288
8
A:102-116
B:102-116
A:144-158
B:144-158
A:186-200
B:186-200
A:274-288
B:274-288
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Exons
(12, 24)
Info
All Exons
Exon 1.3 (A:30-64 | B:30-64)
Exon 1.4 (A:64-88 | B:64-88)
Exon 1.5 (A:89-118 | B:89-118)
Exon 1.6 (A:119-148 | B:119-148)
Exon 1.7 (A:149-176 | B:149-176)
Exon 1.8 (A:177-195 | B:177-195)
Exon 1.9 (A:195-211 | B:195-211)
Exon 1.10 (A:211-236 | B:211-236)
Exon 1.11 (A:236-247 | B:236-247)
Exon 1.12 (A:248-272 | B:248-272)
Exon 1.13 (A:273-302 | B:273-302)
Exon 1.14a (A:302-333 | B:302-333)
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All Exon Boundaries
01: Boundary 1.2b/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14a
13: Boundary 1.14a/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000358625
1
ENSE00001422154
chr9:
137001210-137001322
113
WDR5_HUMAN
-
0
0
-
-
1.2b
ENST00000358625
2b
ENSE00001399325
chr9:
137004942-137005080
139
WDR5_HUMAN
1-27
27
0
-
-
1.3
ENST00000358625
3
ENSE00001378987
chr9:
137005825-137005933
109
WDR5_HUMAN
28-64
37
2
A:30-64
B:30-64
35
35
1.4
ENST00000358625
4
ENSE00001370072
chr9:
137006632-137006705
74
WDR5_HUMAN
64-88
25
2
A:64-88
B:64-88
25
25
1.5
ENST00000358625
5
ENSE00001422107
chr9:
137007071-137007160
90
WDR5_HUMAN
89-118
30
2
A:89-118
B:89-118
30
30
1.6
ENST00000358625
6
ENSE00001415339
chr9:
137007455-137007544
90
WDR5_HUMAN
119-148
30
2
A:119-148
B:119-148
30
30
1.7
ENST00000358625
7
ENSE00001416091
chr9:
137007758-137007841
84
WDR5_HUMAN
149-176
28
2
A:149-176
B:149-176
28
28
1.8
ENST00000358625
8
ENSE00001401373
chr9:
137013410-137013465
56
WDR5_HUMAN
177-195
19
2
A:177-195
B:177-195
19
19
1.9
ENST00000358625
9
ENSE00001430459
chr9:
137017105-137017151
47
WDR5_HUMAN
195-211
17
2
A:195-211
B:195-211
17
17
1.10
ENST00000358625
10
ENSE00001411527
chr9:
137019588-137019663
76
WDR5_HUMAN
211-236
26
2
A:211-236
B:211-236
26
26
1.11
ENST00000358625
11
ENSE00001429531
chr9:
137020462-137020495
34
WDR5_HUMAN
236-247
12
2
A:236-247
B:236-247
12
12
1.12
ENST00000358625
12
ENSE00001431152
chr9:
137020815-137020889
75
WDR5_HUMAN
248-272
25
2
A:248-272
B:248-272
25
25
1.13
ENST00000358625
13
ENSE00001417345
chr9:
137021628-137021715
88
WDR5_HUMAN
273-302
30
2
A:273-302
B:273-302
30
30
1.14a
ENST00000358625
14a
ENSE00001833493
chr9:
137023015-137025090
2076
WDR5_HUMAN
302-334
33
2
A:302-333
B:302-333
32
32
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2g99a_ (A:)
1b: SCOP_d2g99b_ (B:)
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d2g99a_
A:
1b
d2g99b_
B:
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CATH Domains
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Pfam Domains
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Show PDB file:
Asym.Unit (100 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
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