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2G7Z
Biol. Unit 3
Info
Asym.Unit (113 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (97 KB)
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(1)
Title
:
CONSERVED DEGV-LIKE PROTEIN OF UNKNOWN FUNCTION FROM STREPTOCOCCUS PYOGENES M1 GAS BINDS LONG-CHAIN FATTY ACIDS
Authors
:
B. Nocek, L. Volkart, S. Clancy, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date
:
01 Mar 06 (Deposition) - 04 Apr 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Long-Fatty Acid Binding Protein, Lipid Binding Protein, Psi, Mcsg, Hypothetical Protein, Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Nocek, L. Volkart, S. Clancy, A. Joachimiak
Conserved Hypothetical Protein From Streptococcus Pyogenes M1 Gas Discloses Long-Fatty Acid (Heptadecanoic Acid) Binding Function
To Be Published
[
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: DOCOSA-4,7,10,13,16,19-HEXAENOIC A... (HXAa)
3b: DOCOSA-4,7,10,13,16,19-HEXAENOIC A... (HXAb)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
5a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
5b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
6j: ZINC ION (ZNj)
6k: ZINC ION (ZNk)
6l: ZINC ION (ZNl)
6m: ZINC ION (ZNm)
6n: ZINC ION (ZNn)
6o: ZINC ION (ZNo)
6p: ZINC ION (ZNp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
HXA
1
Ligand/Ion
DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID
4
MSE
7
Mod. Amino Acid
SELENOMETHIONINE
5
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
6
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:15 , CL A:7001 , HOH A:9143 , ARG B:102 , GLU B:106
BINDING SITE FOR RESIDUE ZN A 6001
02
AC2
SOFTWARE
HIS A:48 , HIS A:222 , HOH A:9150 , HOH A:9359
BINDING SITE FOR RESIDUE ZN A 6002
03
AC3
SOFTWARE
ASP A:84 , HOH A:9306 , HIS B:252 , GOL B:2649 , HOH B:8346
BINDING SITE FOR RESIDUE ZN A 6003
04
AC4
SOFTWARE
GLU A:17 , HOH A:9307 , HOH A:9316 , HOH A:9360
BINDING SITE FOR RESIDUE ZN A 6004
05
AC5
SOFTWARE
GLU A:106 , GLU B:15 , HOH B:8139 , HOH B:8326
BINDING SITE FOR RESIDUE ZN A 6005
06
AC6
SOFTWARE
GLU A:227 , HOH A:9137 , HOH A:9374 , GLU B:109
BINDING SITE FOR RESIDUE ZN A 6006
07
AC7
SOFTWARE
GLU A:143 , HOH A:9309
BINDING SITE FOR RESIDUE ZN A 6007
08
AC8
SOFTWARE
GLU A:109 , HOH A:9139 , GLU B:227 , HOH B:8342
BINDING SITE FOR RESIDUE ZN A 6008
09
AC9
SOFTWARE
ASN A:251 , HIS A:252 , ASP B:84 , HOH B:8137 , HOH B:8312
BINDING SITE FOR RESIDUE ZN B 6009
10
BC1
SOFTWARE
GLU B:17 , HOH B:8318
BINDING SITE FOR RESIDUE ZN B 6010
11
BC2
SOFTWARE
ASP A:23 , HOH A:9198 , HOH A:9365 , HOH A:9366 , HOH A:9377
BINDING SITE FOR RESIDUE ZN A 6011
12
BC3
SOFTWARE
GLU A:235 , GLU A:269 , HOH A:9149 , HOH A:9367
BINDING SITE FOR RESIDUE ZN A 6012
13
BC4
SOFTWARE
ASP A:195 , GLU A:196 , ASP B:195 , GLU B:196
BINDING SITE FOR RESIDUE ZN A 6013
14
BC5
SOFTWARE
HIS B:48 , HIS B:222 , HOH B:8319 , HOH B:8321
BINDING SITE FOR RESIDUE ZN B 6014
15
BC6
SOFTWARE
ASP B:23 , HOH B:8349 , HOH B:8350
BINDING SITE FOR RESIDUE ZN B 6015
16
BC7
SOFTWARE
GLU B:235 , GLU B:269 , HOH B:8341
BINDING SITE FOR RESIDUE ZN B 6016
17
BC8
SOFTWARE
GLU A:15 , LYS A:125 , ZN A:6001 , GLU B:106
BINDING SITE FOR RESIDUE CL A 7001
18
BC9
SOFTWARE
THR A:62 , SER A:63 , LEU A:94 , SER A:95 , ARG A:172 , ILE A:262 , ILE A:263 , HIS A:266 , PHE A:272 , ALA A:273 , TRS A:5081
BINDING SITE FOR RESIDUE HXA A 9136
19
CC1
SOFTWARE
LEU B:29 , THR B:62 , SER B:63 , GLN B:64 , LEU B:94 , SER B:95 , ILE B:159 , ARG B:172 , ILE B:262 , ILE B:263 , HIS B:266 , ALA B:273 , TRS B:5080
BINDING SITE FOR RESIDUE HXA B 8136
20
CC2
SOFTWARE
SER B:63 , GLN B:64 , SER B:95 , GLY B:96 , ARG B:172 , HXA B:8136
BINDING SITE FOR RESIDUE TRS B 5080
21
CC3
SOFTWARE
SER A:63 , GLN A:64 , SER A:95 , GLY A:96 , ARG A:172 , HXA A:9136 , HOH A:9196
BINDING SITE FOR RESIDUE TRS A 5081
22
CC4
SOFTWARE
PRO A:60 , LYS A:61 , THR A:62 , GLY A:170 , HIS A:266 , HOH A:9196 , HOH A:9380
BINDING SITE FOR RESIDUE GOL A 2647
23
CC5
SOFTWARE
PRO B:60 , LYS B:61 , THR B:62 , GLY B:170 , HIS B:266 , HOH B:8201
BINDING SITE FOR RESIDUE GOL B 2648
24
CC6
SOFTWARE
ZN A:6003 , HOH A:9306 , ASN B:251 , HIS B:252 , HOH B:8283 , HOH B:8346
BINDING SITE FOR RESIDUE GOL B 2649
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DEGV (A:4-278,B:4-278)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEGV
PS51482
DegV domain profile.
Y1493_STRP1
4-278
2
A:4-278
B:4-278
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2g7za_ (A:)
1b: SCOP_d2g7zb_ (B:)
View:
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Label:
Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DAK1/DegV-like
(26)
Superfamily
:
DAK1/DegV-like
(26)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Streptococcus pyogenes [TaxId: 160490]
(1)
1a
d2g7za_
A:
1b
d2g7zb_
B:
[
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]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2g7zA02 (A:155-279)
1b: CATH_2g7zB02 (B:155-279)
View:
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Topologies
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Hypothetical Protein Tm841; Chain: A;domain 3
(10)
Homologous Superfamily
:
[code=3.30.1180.10, no name defined]
(6)
Streptococcus pyogenes serotype m1. Organism_taxid: 301447. Strain: gas.
(1)
1a
2g7zA02
A:155-279
1b
2g7zB02
B:155-279
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
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