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2G7Z
Asym. Unit
Info
Asym.Unit (113 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (97 KB)
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(1)
Title
:
CONSERVED DEGV-LIKE PROTEIN OF UNKNOWN FUNCTION FROM STREPTOCOCCUS PYOGENES M1 GAS BINDS LONG-CHAIN FATTY ACIDS
Authors
:
B. Nocek, L. Volkart, S. Clancy, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date
:
01 Mar 06 (Deposition) - 04 Apr 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Long-Fatty Acid Binding Protein, Lipid Binding Protein, Psi, Mcsg, Hypothetical Protein, Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Nocek, L. Volkart, S. Clancy, A. Joachimiak
Conserved Hypothetical Protein From Streptococcus Pyogenes M1 Gas Discloses Long-Fatty Acid (Heptadecanoic Acid) Binding Function
To Be Published
[
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Hetero Components
(6, 38)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: DOCOSA-4,7,10,13,16,19-HEXAENOIC A... (HXAa)
3b: DOCOSA-4,7,10,13,16,19-HEXAENOIC A... (HXAb)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
5a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
5b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
6j: ZINC ION (ZNj)
6k: ZINC ION (ZNk)
6l: ZINC ION (ZNl)
6m: ZINC ION (ZNm)
6n: ZINC ION (ZNn)
6o: ZINC ION (ZNo)
6p: ZINC ION (ZNp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GOL
3
Ligand/Ion
GLYCEROL
3
HXA
2
Ligand/Ion
DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID
4
MSE
14
Mod. Amino Acid
SELENOMETHIONINE
5
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
6
ZN
16
Ligand/Ion
ZINC ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:15 , CL A:7001 , HOH A:9143 , ARG B:102 , GLU B:106
BINDING SITE FOR RESIDUE ZN A 6001
02
AC2
SOFTWARE
HIS A:48 , HIS A:222 , HOH A:9150 , HOH A:9359
BINDING SITE FOR RESIDUE ZN A 6002
03
AC3
SOFTWARE
ASP A:84 , HOH A:9306 , HIS B:252 , GOL B:2649 , HOH B:8346
BINDING SITE FOR RESIDUE ZN A 6003
04
AC4
SOFTWARE
GLU A:17 , HOH A:9307 , HOH A:9316 , HOH A:9360
BINDING SITE FOR RESIDUE ZN A 6004
05
AC5
SOFTWARE
GLU A:106 , GLU B:15 , HOH B:8139 , HOH B:8326
BINDING SITE FOR RESIDUE ZN A 6005
06
AC6
SOFTWARE
GLU A:227 , HOH A:9137 , HOH A:9374 , GLU B:109
BINDING SITE FOR RESIDUE ZN A 6006
07
AC7
SOFTWARE
GLU A:143 , HOH A:9309
BINDING SITE FOR RESIDUE ZN A 6007
08
AC8
SOFTWARE
GLU A:109 , HOH A:9139 , GLU B:227 , HOH B:8342
BINDING SITE FOR RESIDUE ZN A 6008
09
AC9
SOFTWARE
ASN A:251 , HIS A:252 , ASP B:84 , HOH B:8137 , HOH B:8312
BINDING SITE FOR RESIDUE ZN B 6009
10
BC1
SOFTWARE
GLU B:17 , HOH B:8318
BINDING SITE FOR RESIDUE ZN B 6010
11
BC2
SOFTWARE
ASP A:23 , HOH A:9198 , HOH A:9365 , HOH A:9366 , HOH A:9377
BINDING SITE FOR RESIDUE ZN A 6011
12
BC3
SOFTWARE
GLU A:235 , GLU A:269 , HOH A:9149 , HOH A:9367
BINDING SITE FOR RESIDUE ZN A 6012
13
BC4
SOFTWARE
ASP A:195 , GLU A:196 , ASP B:195 , GLU B:196
BINDING SITE FOR RESIDUE ZN A 6013
14
BC5
SOFTWARE
HIS B:48 , HIS B:222 , HOH B:8319 , HOH B:8321
BINDING SITE FOR RESIDUE ZN B 6014
15
BC6
SOFTWARE
ASP B:23 , HOH B:8349 , HOH B:8350
BINDING SITE FOR RESIDUE ZN B 6015
16
BC7
SOFTWARE
GLU B:235 , GLU B:269 , HOH B:8341
BINDING SITE FOR RESIDUE ZN B 6016
17
BC8
SOFTWARE
GLU A:15 , LYS A:125 , ZN A:6001 , GLU B:106
BINDING SITE FOR RESIDUE CL A 7001
18
BC9
SOFTWARE
THR A:62 , SER A:63 , LEU A:94 , SER A:95 , ARG A:172 , ILE A:262 , ILE A:263 , HIS A:266 , PHE A:272 , ALA A:273 , TRS A:5081
BINDING SITE FOR RESIDUE HXA A 9136
19
CC1
SOFTWARE
LEU B:29 , THR B:62 , SER B:63 , GLN B:64 , LEU B:94 , SER B:95 , ILE B:159 , ARG B:172 , ILE B:262 , ILE B:263 , HIS B:266 , ALA B:273 , TRS B:5080
BINDING SITE FOR RESIDUE HXA B 8136
20
CC2
SOFTWARE
SER B:63 , GLN B:64 , SER B:95 , GLY B:96 , ARG B:172 , HXA B:8136
BINDING SITE FOR RESIDUE TRS B 5080
21
CC3
SOFTWARE
SER A:63 , GLN A:64 , SER A:95 , GLY A:96 , ARG A:172 , HXA A:9136 , HOH A:9196
BINDING SITE FOR RESIDUE TRS A 5081
22
CC4
SOFTWARE
PRO A:60 , LYS A:61 , THR A:62 , GLY A:170 , HIS A:266 , HOH A:9196 , HOH A:9380
BINDING SITE FOR RESIDUE GOL A 2647
23
CC5
SOFTWARE
PRO B:60 , LYS B:61 , THR B:62 , GLY B:170 , HIS B:266 , HOH B:8201
BINDING SITE FOR RESIDUE GOL B 2648
24
CC6
SOFTWARE
ZN A:6003 , HOH A:9306 , ASN B:251 , HIS B:252 , HOH B:8283 , HOH B:8346
BINDING SITE FOR RESIDUE GOL B 2649
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DEGV (A:4-278,B:4-278)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEGV
PS51482
DegV domain profile.
Y1493_STRP1
4-278
2
A:4-278
B:4-278
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2g7za_ (A:)
1b: SCOP_d2g7zb_ (B:)
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Classes
(
)
(
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Folds
(
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(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DAK1/DegV-like
(26)
Superfamily
:
DAK1/DegV-like
(26)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Streptococcus pyogenes [TaxId: 160490]
(1)
1a
d2g7za_
A:
1b
d2g7zb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2g7zA02 (A:155-279)
1b: CATH_2g7zB02 (B:155-279)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Hypothetical Protein Tm841; Chain: A;domain 3
(10)
Homologous Superfamily
:
[code=3.30.1180.10, no name defined]
(6)
Streptococcus pyogenes serotype m1. Organism_taxid: 301447. Strain: gas.
(1)
1a
2g7zA02
A:155-279
1b
2g7zB02
B:155-279
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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