PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2G7I
Biol. Unit 1
Info
Asym.Unit (30 KB)
Biol.Unit 1 (93 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF HUMAN COMPLEMENT FACTOR H CARBOXYL TERMINAL DOMAINS 19-20: A BASIS FOR ATYPICAL HEMOLYTIC UREMIC SYNDROME
Authors
:
V. -P. Jaakola, T. S. Jokiranta, A. Goldman
Date
:
28 Feb 06 (Deposition) - 23 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Sushi (Ccp/Scr) Domain, Complement, Regulator, Factor H, Beta-1H Globulin, Immune System, Atypical Hemolytic Uremic Syndrome, Heparin Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. S. Jokiranta, V. -P. Jaakola, M. J. Lehtinen, M. Parepalo, S. Meri, A. Goldman
Structure Of Complement Factor H Carboxyl-Terminus Reveals Molecular Basis Of Atypical Haemolytic Uremic Syndrome.
Embo J. V. 25 1784 2006
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(21, 84)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_025874 (D1119G, chain A, )
02: VAR_025875 (V1134G, chain A, )
03: VAR_025876 (Y1142D, chain A, )
04: VAR_043896 (Q1143E, chain A, )
05: VAR_025877 (W1157R, chain A, )
06: VAR_025878 (C1163W, chain A, )
07: VAR_063650 (I1169L, chain A, )
08: VAR_063651 (W1183C, chain A, )
09: VAR_025879 (W1183L, chain A, )
10: VAR_025880 (W1183R, chain A, )
11: VAR_025881 (T1184R, chain A, )
12: VAR_019407 (L1189R, chain A, )
13: VAR_019408 (S1191L, chain A, )
14: VAR_025882 (G1194D, chain A, )
15: VAR_025883 (V1197A, chain A, )
16: VAR_025884 (E1198A, chain A, )
17: VAR_031986 (F1199S, chain A, )
18: VAR_025885 (R1210C, chain A, )
19: VAR_025886 (R1215G, chain A, )
20: VAR_025887 (R1215Q, chain A, )
21: VAR_025888 (P1226S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_025874
D
1119
G
CFAH_HUMAN
Disease (CFHD)
---
A
D
1119
G
02
UniProt
VAR_025875
V
1134
G
CFAH_HUMAN
Disease (AHUS1)
---
A
V
1134
G
03
UniProt
VAR_025876
Y
1142
D
CFAH_HUMAN
Disease (AHUS1)
---
A
Y
1142
D
04
UniProt
VAR_043896
Q
1143
E
CFAH_HUMAN
Polymorphism
34247141
A
Q
1143
E
05
UniProt
VAR_025877
W
1157
R
CFAH_HUMAN
Disease (AHUS1)
---
A
W
1157
R
06
UniProt
VAR_025878
C
1163
W
CFAH_HUMAN
Disease (AHUS1)
---
A
C
1163
W
07
UniProt
VAR_063650
I
1169
L
CFAH_HUMAN
Disease (AHUS1)
---
A
I
1169
L
08
UniProt
VAR_063651
W
1183
C
CFAH_HUMAN
Disease (AHUS1)
---
A
W
1183
C
09
UniProt
VAR_025879
W
1183
L
CFAH_HUMAN
Disease (AHUS1)
---
A
W
1183
L
10
UniProt
VAR_025880
W
1183
R
CFAH_HUMAN
Disease (AHUS1)
---
A
W
1183
R
11
UniProt
VAR_025881
T
1184
R
CFAH_HUMAN
Disease (CFHD)
---
A
T
1184
R
12
UniProt
VAR_019407
L
1189
R
CFAH_HUMAN
Disease (AHUS1)
---
A
L
1189
R
13
UniProt
VAR_019408
S
1191
L
CFAH_HUMAN
Disease (AHUS1)
460897
A
S
1191
L
14
UniProt
VAR_025882
G
1194
D
CFAH_HUMAN
Disease (AHUS1)
---
A
G
1194
D
15
UniProt
VAR_025883
V
1197
A
CFAH_HUMAN
Disease (AHUS1)
460184
A
V
1197
A
16
UniProt
VAR_025884
E
1198
A
CFAH_HUMAN
Disease (AHUS1)
---
A
E
1198
A
17
UniProt
VAR_031986
F
1199
S
CFAH_HUMAN
Disease (AHUS1)
---
A
F
1199
S
18
UniProt
VAR_025885
R
1210
C
CFAH_HUMAN
Disease (ARMD4)
---
A
R
1210
C
19
UniProt
VAR_025886
R
1215
G
CFAH_HUMAN
Disease (AHUS1)
---
A
R
1215
G
20
UniProt
VAR_025887
R
1215
Q
CFAH_HUMAN
Disease (CFHD)
---
A
R
1215
Q
21
UniProt
VAR_025888
P
1226
S
CFAH_HUMAN
Disease (AHUS1)
---
A
P
1226
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: SUSHI (A:1194-1230)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CFAH_HUMAN
19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
8
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A:1107-1165
A:1194-1230
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (30 KB)
Header - Asym.Unit
Biol.Unit 1 (93 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2G7I
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help