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2G50
Asym. Unit
Info
Asym.Unit (781 KB)
Biol.Unit 1 (387 KB)
Biol.Unit 2 (388 KB)
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(1)
Title
:
THE LOCATION OF THE ALLOSTERIC AMINO ACID BINDING SITE OF MUSCLE PYRUVATE KINASE.
Authors
:
T. Holyoak, R. Williams, A. W. Fenton
Date
:
22 Feb 06 (Deposition) - 09 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Allostery, Pyruvate Kinase, Glycolysis, Kinase, Phosphoryl Transfer, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Williams, T. Holyoak, G. Mcdonald, C. Gui, A. W. Fenton
Differentiating A Ligand'S Chemical Requirements For Allosteric Interactions From Those For Protein Binding. Phenylalanine Inhibition Of Pyruvate Kinase.
Biochemistry V. 45 5421 2006
[
close entry info
]
Hetero Components
(8, 102)
Info
All Hetero Components
1a: ALANINE (ALAa)
1b: ALANINE (ALAb)
1c: ALANINE (ALAc)
1d: ALANINE (ALAd)
1e: ALANINE (ALAe)
1f: ALANINE (ALAf)
1g: ALANINE (ALAg)
1h: ALANINE (ALAh)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]... (ETEa)
4a: GLYCEROL (GOLa)
4aa: GLYCEROL (GOLaa)
4ab: GLYCEROL (GOLab)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
4o: GLYCEROL (GOLo)
4p: GLYCEROL (GOLp)
4q: GLYCEROL (GOLq)
4r: GLYCEROL (GOLr)
4s: GLYCEROL (GOLs)
4t: GLYCEROL (GOLt)
4u: GLYCEROL (GOLu)
4v: GLYCEROL (GOLv)
4w: GLYCEROL (GOLw)
4x: GLYCEROL (GOLx)
4y: GLYCEROL (GOLy)
4z: GLYCEROL (GOLz)
5a: POTASSIUM ION (Ka)
5b: POTASSIUM ION (Kb)
5c: POTASSIUM ION (Kc)
5d: POTASSIUM ION (Kd)
5e: POTASSIUM ION (Ke)
5f: POTASSIUM ION (Kf)
5g: POTASSIUM ION (Kg)
5h: POTASSIUM ION (Kh)
6a: MANGANESE (II) ION (MNa)
6b: MANGANESE (II) ION (MNb)
6c: MANGANESE (II) ION (MNc)
6d: MANGANESE (II) ION (MNd)
6e: MANGANESE (II) ION (MNe)
6f: MANGANESE (II) ION (MNf)
6g: MANGANESE (II) ION (MNg)
6h: MANGANESE (II) ION (MNh)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
7c: SODIUM ION (NAc)
7d: SODIUM ION (NAd)
7e: SODIUM ION (NAe)
7f: SODIUM ION (NAf)
7g: SODIUM ION (NAg)
7h: SODIUM ION (NAh)
7i: SODIUM ION (NAi)
7j: SODIUM ION (NAj)
7k: SODIUM ION (NAk)
7l: SODIUM ION (NAl)
8a: PYRUVIC ACID (PYRa)
8b: PYRUVIC ACID (PYRb)
8c: PYRUVIC ACID (PYRc)
8d: PYRUVIC ACID (PYRd)
8e: PYRUVIC ACID (PYRe)
8f: PYRUVIC ACID (PYRf)
8g: PYRUVIC ACID (PYRg)
8h: PYRUVIC ACID (PYRh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALA
8
Mod. Amino Acid
ALANINE
2
EDO
29
Ligand/Ion
1,2-ETHANEDIOL
3
ETE
1
Ligand/Ion
2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
4
GOL
28
Ligand/Ion
GLYCEROL
5
K
8
Ligand/Ion
POTASSIUM ION
6
MN
8
Ligand/Ion
MANGANESE (II) ION
7
NA
12
Ligand/Ion
SODIUM ION
8
PYR
8
Ligand/Ion
PYRUVIC ACID
[
close Hetero Component info
]
Sites
(102, 102)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: BC1 (SOFTWARE)
011: BC2 (SOFTWARE)
012: BC3 (SOFTWARE)
013: BC4 (SOFTWARE)
014: BC5 (SOFTWARE)
015: BC6 (SOFTWARE)
016: BC7 (SOFTWARE)
017: BC8 (SOFTWARE)
018: BC9 (SOFTWARE)
019: CC1 (SOFTWARE)
020: CC2 (SOFTWARE)
021: CC3 (SOFTWARE)
022: CC4 (SOFTWARE)
023: CC5 (SOFTWARE)
024: CC6 (SOFTWARE)
025: CC7 (SOFTWARE)
026: CC8 (SOFTWARE)
027: CC9 (SOFTWARE)
028: DC1 (SOFTWARE)
029: DC2 (SOFTWARE)
030: DC3 (SOFTWARE)
031: DC4 (SOFTWARE)
032: DC5 (SOFTWARE)
033: DC6 (SOFTWARE)
034: DC7 (SOFTWARE)
035: DC8 (SOFTWARE)
036: DC9 (SOFTWARE)
037: EC1 (SOFTWARE)
038: EC2 (SOFTWARE)
039: EC3 (SOFTWARE)
040: EC4 (SOFTWARE)
041: EC5 (SOFTWARE)
042: EC6 (SOFTWARE)
043: EC7 (SOFTWARE)
044: EC8 (SOFTWARE)
045: EC9 (SOFTWARE)
046: FC1 (SOFTWARE)
047: FC2 (SOFTWARE)
048: FC3 (SOFTWARE)
049: FC4 (SOFTWARE)
050: FC5 (SOFTWARE)
051: FC6 (SOFTWARE)
052: FC7 (SOFTWARE)
053: FC8 (SOFTWARE)
054: FC9 (SOFTWARE)
055: GC1 (SOFTWARE)
056: GC2 (SOFTWARE)
057: GC3 (SOFTWARE)
058: GC4 (SOFTWARE)
059: GC5 (SOFTWARE)
060: GC6 (SOFTWARE)
061: GC7 (SOFTWARE)
062: GC8 (SOFTWARE)
063: GC9 (SOFTWARE)
064: HC1 (SOFTWARE)
065: HC2 (SOFTWARE)
066: HC3 (SOFTWARE)
067: HC4 (SOFTWARE)
068: HC5 (SOFTWARE)
069: HC6 (SOFTWARE)
070: HC7 (SOFTWARE)
071: HC8 (SOFTWARE)
072: HC9 (SOFTWARE)
073: IC1 (SOFTWARE)
074: IC2 (SOFTWARE)
075: IC3 (SOFTWARE)
076: IC4 (SOFTWARE)
077: IC5 (SOFTWARE)
078: IC6 (SOFTWARE)
079: IC7 (SOFTWARE)
080: IC8 (SOFTWARE)
081: IC9 (SOFTWARE)
082: JC1 (SOFTWARE)
083: JC2 (SOFTWARE)
084: JC3 (SOFTWARE)
085: JC4 (SOFTWARE)
086: JC5 (SOFTWARE)
087: JC6 (SOFTWARE)
088: JC7 (SOFTWARE)
089: JC8 (SOFTWARE)
090: JC9 (SOFTWARE)
091: KC1 (SOFTWARE)
092: KC2 (SOFTWARE)
093: KC3 (SOFTWARE)
094: KC4 (SOFTWARE)
095: KC5 (SOFTWARE)
096: KC6 (SOFTWARE)
097: KC7 (SOFTWARE)
098: KC8 (SOFTWARE)
099: KC9 (SOFTWARE)
100: LC1 (SOFTWARE)
101: LC2 (SOFTWARE)
102: LC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
GLU A:271 , ASP A:295 , PYR A:600 , HOH A:6777 , HOH A:6778
BINDING SITE FOR RESIDUE MN A 640
002
AC2
SOFTWARE
ASN A:74 , SER A:76 , ASP A:112 , THR A:113 , HOH A:6776 , HOH A:6779
BINDING SITE FOR RESIDUE K A 6501
003
AC3
SOFTWARE
GLU B:271 , ASP B:295 , PYR B:600 , HOH B:6929 , HOH B:6930
BINDING SITE FOR RESIDUE MN B 640
004
AC4
SOFTWARE
ASN B:74 , SER B:76 , ASP B:112 , THR B:113 , SER B:242 , HOH B:6928 , HOH B:6931
BINDING SITE FOR RESIDUE K B 6502
005
AC5
SOFTWARE
GLU C:271 , ASP C:295 , PYR C:600 , HOH C:6693 , HOH C:6694
BINDING SITE FOR RESIDUE MN C 640
006
AC6
SOFTWARE
ASN C:74 , SER C:76 , ASP C:112 , THR C:113 , SER C:242 , HOH C:6692 , HOH C:6695
BINDING SITE FOR RESIDUE K C 6503
007
AC7
SOFTWARE
GLU D:271 , ASP D:295 , PYR D:600 , HOH D:7070 , HOH D:7073
BINDING SITE FOR RESIDUE MN D 640
008
AC8
SOFTWARE
ASN D:74 , SER D:76 , ASP D:112 , THR D:113 , SER D:242 , HOH D:7071 , HOH D:7072
BINDING SITE FOR RESIDUE K D 6504
009
AC9
SOFTWARE
GLU E:271 , ASP E:295 , PYR E:600 , HOH E:3432 , HOH E:3433
BINDING SITE FOR RESIDUE MN E 640
010
BC1
SOFTWARE
ASN E:74 , SER E:76 , ASP E:112 , THR E:113 , HOH E:3431 , HOH E:3434
BINDING SITE FOR RESIDUE K E 6505
011
BC2
SOFTWARE
GLU F:271 , ASP F:295 , PYR F:600 , HOH F:6523 , HOH F:6825
BINDING SITE FOR RESIDUE MN F 640
012
BC3
SOFTWARE
ASN F:74 , SER F:76 , ASP F:112 , THR F:113 , SER F:242 , HOH F:6524 , HOH F:6824
BINDING SITE FOR RESIDUE K F 6506
013
BC4
SOFTWARE
GLU G:271 , ASP G:295 , PYR G:600 , HOH G:2776 , HOH G:2777
BINDING SITE FOR RESIDUE MN G 640
014
BC5
SOFTWARE
ASN G:74 , SER G:76 , ASP G:112 , THR G:113 , SER G:242 , HOH G:2775 , HOH G:2778
BINDING SITE FOR RESIDUE K G 6507
015
BC6
SOFTWARE
GLU H:271 , ASP H:295 , PYR H:600 , HOH H:6673 , HOH H:6674
BINDING SITE FOR RESIDUE MN H 640
016
BC7
SOFTWARE
ASN H:74 , SER H:76 , ASP H:112 , THR H:113 , HOH H:6672 , HOH H:6675
BINDING SITE FOR RESIDUE K H 6508
017
BC8
SOFTWARE
LYS A:124 , GLY A:125 , SER A:126 , GLY A:127 , THR A:128 , HOH A:7006 , HOH A:7007
BINDING SITE FOR RESIDUE NA A 6019
018
BC9
SOFTWARE
LYS D:124 , GLY D:125 , SER D:126 , GLY D:127 , THR D:128 , HOH D:6753
BINDING SITE FOR RESIDUE NA D 6020
019
CC1
SOFTWARE
LYS E:124 , GLY E:125 , SER E:126 , GLY E:127 , THR E:128 , HOH E:4539
BINDING SITE FOR RESIDUE NA E 6021
020
CC2
SOFTWARE
LYS H:124 , GLY H:125 , SER H:126 , GLY H:127 , THR H:128 , HOH H:6510 , HOH H:6745
BINDING SITE FOR RESIDUE NA H 6022
021
CC3
SOFTWARE
THR A:431 , SER A:436 , HOH A:6812
BINDING SITE FOR RESIDUE NA A 6023
022
CC4
SOFTWARE
THR B:431 , SER B:436 , HOH B:6556
BINDING SITE FOR RESIDUE NA B 6024
023
CC5
SOFTWARE
THR C:431 , SER C:436 , HOH C:6628
BINDING SITE FOR RESIDUE NA C 6025
024
CC6
SOFTWARE
THR D:431 , SER D:436 , HOH D:6516
BINDING SITE FOR RESIDUE NA D 6026
025
CC7
SOFTWARE
THR F:431 , SER F:436 , HOH F:6754
BINDING SITE FOR RESIDUE NA F 6027
026
CC8
SOFTWARE
THR G:431 , SER G:436 , HOH G:3003
BINDING SITE FOR RESIDUE NA G 6028
027
CC9
SOFTWARE
THR H:431 , SER H:436 , HOH H:6625
BINDING SITE FOR RESIDUE NA H 6029
028
DC1
SOFTWARE
THR E:431 , SER E:436 , HOH E:4160
BINDING SITE FOR RESIDUE NA E 6030
029
DC2
SOFTWARE
ARG A:42 , ASN A:43 , ASN A:69 , ARG A:105 , HIS A:463 , ILE A:468 , PHE A:469 , PRO A:470 , HOH A:6548 , HOH A:6549 , HOH A:7059
BINDING SITE FOR RESIDUE ALA A 6101
030
DC3
SOFTWARE
LYS A:269 , GLU A:271 , ALA A:292 , ARG A:293 , GLY A:294 , ASP A:295 , THR A:327 , MN A:640 , HOH A:6776 , HOH A:6777 , HOH A:6778
BINDING SITE FOR RESIDUE PYR A 600
031
DC4
SOFTWARE
ARG B:42 , ASN B:43 , ASN B:69 , HIS B:463 , ILE B:468 , PHE B:469 , PRO B:470 , EDO B:6032 , HOH B:6758 , HOH B:6765 , HOH B:6766
BINDING SITE FOR RESIDUE ALA B 6102
032
DC5
SOFTWARE
LYS B:269 , GLU B:271 , ALA B:292 , ARG B:293 , GLY B:294 , ASP B:295 , THR B:327 , MN B:640 , HOH B:6928 , HOH B:6929 , HOH B:6930
BINDING SITE FOR RESIDUE PYR B 600
033
DC6
SOFTWARE
ARG C:42 , ASN C:43 , ASN C:69 , ARG C:105 , HIS C:463 , ILE C:468 , PHE C:469 , PRO C:470 , HOH C:6535 , HOH C:6547 , HOH C:7053
BINDING SITE FOR RESIDUE ALA C 6103
034
DC7
SOFTWARE
LYS C:269 , GLU C:271 , ALA C:292 , ARG C:293 , GLY C:294 , ASP C:295 , THR C:327 , MN C:640 , HOH C:6692 , HOH C:6693 , HOH C:6694
BINDING SITE FOR RESIDUE PYR C 600
035
DC8
SOFTWARE
ARG D:42 , ASN D:43 , ASN D:69 , ARG D:105 , HIS D:463 , ILE D:468 , PHE D:469 , PRO D:470 , HOH D:6995 , HOH D:6998 , HOH D:7124
BINDING SITE FOR RESIDUE ALA D 6104
036
DC9
SOFTWARE
LYS D:269 , GLU D:271 , ALA D:292 , ARG D:293 , GLY D:294 , ASP D:295 , THR D:327 , MN D:640 , EDO D:6033 , HOH D:7070 , HOH D:7072 , HOH D:7073
BINDING SITE FOR RESIDUE PYR D 600
037
EC1
SOFTWARE
ARG E:42 , ASN E:43 , ASN E:69 , ARG E:105 , HIS E:463 , ILE E:468 , PHE E:469 , PRO E:470 , HOH E:3633 , HOH E:3634 , HOH E:4515 , HOH E:4823
BINDING SITE FOR RESIDUE ALA E 6105
038
EC2
SOFTWARE
LYS E:269 , GLU E:271 , ALA E:292 , ARG E:293 , GLY E:294 , ASP E:295 , THR E:327 , MN E:640 , HOH E:3431 , HOH E:3432 , HOH E:3433
BINDING SITE FOR RESIDUE PYR E 600
039
EC3
SOFTWARE
ARG F:42 , ASN F:43 , ASN F:69 , ARG F:105 , HIS F:463 , ILE F:468 , PHE F:469 , PRO F:470 , HOH F:6646 , HOH F:6647 , HOH F:7014
BINDING SITE FOR RESIDUE ALA F 6106
040
EC4
SOFTWARE
LYS F:269 , GLU F:271 , ALA F:292 , ARG F:293 , GLY F:294 , ASP F:295 , THR F:327 , MN F:640 , GOL F:6057 , HOH F:6523 , HOH F:6524 , HOH F:6825
BINDING SITE FOR RESIDUE PYR F 600
041
EC5
SOFTWARE
ARG G:42 , ASN G:43 , ASN G:69 , ARG G:105 , HIS G:463 , ILE G:468 , PHE G:469 , PRO G:470 , HOH G:3727 , HOH G:3728 , HOH G:4510
BINDING SITE FOR RESIDUE ALA G 6107
042
EC6
SOFTWARE
LYS G:269 , GLU G:271 , ALA G:292 , ARG G:293 , GLY G:294 , ASP G:295 , THR G:327 , MN G:640 , HOH G:2775 , HOH G:2776 , HOH G:2777
BINDING SITE FOR RESIDUE PYR G 600
043
EC7
SOFTWARE
ARG H:42 , ASN H:43 , ASN H:69 , ARG H:105 , HIS H:463 , ILE H:468 , PHE H:469 , PRO H:470 , HOH H:6893 , HOH H:6894 , HOH H:6960
BINDING SITE FOR RESIDUE ALA H 6108
044
EC8
SOFTWARE
LYS H:269 , GLU H:271 , ALA H:292 , ARG H:293 , GLY H:294 , ASP H:295 , THR H:327 , MN H:640 , EDO H:6041 , HOH H:6672 , HOH H:6673 , HOH H:6674
BINDING SITE FOR RESIDUE PYR H 600
045
EC9
SOFTWARE
PRO D:38 , THR D:40 , HOH D:6618
BINDING SITE FOR RESIDUE EDO D 6011
046
FC1
SOFTWARE
PRO F:38 , THR F:40 , HOH F:6631 , HOH F:6637
BINDING SITE FOR RESIDUE EDO F 6012
047
FC2
SOFTWARE
PRO B:38 , THR B:40 , HOH B:6977
BINDING SITE FOR RESIDUE EDO B 6013
048
FC3
SOFTWARE
PRO C:38 , THR C:40 , HOH C:6573
BINDING SITE FOR RESIDUE EDO C 6014
049
FC4
SOFTWARE
PRO E:38 , THR E:40 , EDO G:6016
BINDING SITE FOR RESIDUE EDO E 6015
050
FC5
SOFTWARE
ALA E:37 , EDO E:6015 , LYS G:304 , HOH G:2692
BINDING SITE FOR RESIDUE EDO G 6016
051
FC6
SOFTWARE
ARG D:72 , ASN D:74 , SER D:361 , GLY D:362 , HOH D:6676 , HOH D:7072
BINDING SITE FOR RESIDUE EDO D 6017
052
FC7
SOFTWARE
TYR B:104 , ARG B:105 , PRO B:106 , HIS B:463 , PHE B:469 , PRO B:470 , ARG B:499 , ALA B:6102 , HOH B:6755 , HOH B:6758
BINDING SITE FOR RESIDUE EDO B 6032
053
FC8
SOFTWARE
ASP D:177 , GLY D:294 , PYR D:600
BINDING SITE FOR RESIDUE EDO D 6033
054
FC9
SOFTWARE
ARG H:72 , ASN H:74 , SER H:361 , HOH H:6667 , HOH H:6668 , HOH H:6772
BINDING SITE FOR RESIDUE EDO H 6034
055
GC1
SOFTWARE
ARG F:338 , PRO F:339 , ARG F:341 , HOH F:6514 , ASP H:177 , GLN H:328
BINDING SITE FOR RESIDUE EDO F 6036
056
GC2
SOFTWARE
GLU H:284 , ALA H:285 , SER H:286 , ASP H:287 , LYS H:321 , HOH H:6709 , HOH H:7085
BINDING SITE FOR RESIDUE EDO H 6037
057
GC3
SOFTWARE
ARG E:72 , ASN E:74 , SER E:361 , GLY E:362 , HOH E:3429 , EDO E:6046
BINDING SITE FOR RESIDUE EDO E 6038
058
GC4
SOFTWARE
ASP E:177
BINDING SITE FOR RESIDUE EDO E 6039
059
GC5
SOFTWARE
THR D:138 , GLU D:153 , ASN D:154
BINDING SITE FOR RESIDUE EDO D 6040
060
GC6
SOFTWARE
ASP H:177 , GLY H:294 , ASP H:295 , PYR H:600 , HOH H:6525
BINDING SITE FOR RESIDUE EDO H 6041
061
GC7
SOFTWARE
ARG F:318 , GLU H:27 , CYS H:30 , HOH H:7076
BINDING SITE FOR RESIDUE EDO H 6042
062
GC8
SOFTWARE
GLU A:95 , TYR A:104 , HIS A:456 , ARG A:460 , HOH A:6559 , HOH A:6698 , HOH A:6701 , HOH A:7111
BINDING SITE FOR RESIDUE EDO A 6043
063
GC9
SOFTWARE
ASP A:177 , GLN A:328 , PRO C:339 , ARG C:341 , HOH C:7078
BINDING SITE FOR RESIDUE EDO C 6044
064
HC1
SOFTWARE
ARG E:55 , TYR E:82 , HOH E:2717 , HOH E:5069 , GOL E:6031 , HOH H:6567
BINDING SITE FOR RESIDUE EDO E 6045
065
HC2
SOFTWARE
ILE E:50 , GLY E:51 , ASN E:74 , ALA E:365 , LYS E:366 , HOH E:3458 , EDO E:6038
BINDING SITE FOR RESIDUE EDO E 6046
066
HC3
SOFTWARE
ARG B:254 , GLU B:284 , ALA B:285 , SER B:286 , ASP B:287 , LYS B:321 , HOH B:6897 , HOH B:7013
BINDING SITE FOR RESIDUE EDO B 6047
067
HC4
SOFTWARE
ASP B:177 , GLY B:294 , ASP B:295 , GOL B:6302 , HOH B:6922 , HOH B:6924 , HOH B:7001 , HOH B:7009
BINDING SITE FOR RESIDUE EDO B 6048
068
HC5
SOFTWARE
GLU E:284 , ALA E:285 , SER E:286 , LYS E:321 , HOH E:3355 , HOH E:4836 , HOH E:4961
BINDING SITE FOR RESIDUE EDO E 6049
069
HC6
SOFTWARE
GLU A:284 , ALA A:285 , SER A:286 , ASP A:287 , LYS A:321 , HOH A:7107 , HOH A:7115 , HOH A:7120
BINDING SITE FOR RESIDUE EDO A 6050
070
HC7
SOFTWARE
ARG A:338 , PRO A:339 , THR A:340 , ARG A:341 , HOH A:7048 , ASP C:177 , LEU C:179 , GLN C:328
BINDING SITE FOR RESIDUE EDO A 6051
071
HC8
SOFTWARE
ARG G:42 , LYS G:65 , SER G:66 , GLY G:67 , HOH G:3479 , HOH G:3726 , HOH G:3729
BINDING SITE FOR RESIDUE EDO G 6052
072
HC9
SOFTWARE
GLU H:58 , LYS H:61 , HOH H:6652
BINDING SITE FOR RESIDUE EDO H 6053
073
IC1
SOFTWARE
GOL E:6031 , PRO H:52 , ALA H:53 , SER H:54 , ARG H:55 , SER H:56 , THR H:59 , HOH H:6660
BINDING SITE FOR RESIDUE EDO H 6054
074
IC2
SOFTWARE
THR B:49 , ILE B:50 , GLY B:51 , PRO B:52 , ARG B:72 , ASN B:74 , ALA B:365 , LYS B:366 , HOH B:6655 , HOH B:6928 , HOH B:6954 , HOH B:7011
BINDING SITE FOR RESIDUE ETE B 6018
075
IC3
SOFTWARE
PRO A:116 , ASN A:209 , LEU A:210 , VAL A:215 , ARG A:245 , GLU A:299 , HOH A:6657 , HOH A:6658
BINDING SITE FOR RESIDUE GOL A 6201
076
IC4
SOFTWARE
GLU A:117 , ILE A:118 , GLY A:207 , VAL A:208 , PHE A:243 , ASP A:295 , HOH A:6755 , HOH A:6777
BINDING SITE FOR RESIDUE GOL A 6301
077
IC5
SOFTWARE
PRO B:116 , ASN B:209 , LEU B:210 , VAL B:215 , ARG B:245 , GLU B:299 , HOH B:6613 , HOH B:6614 , HOH B:6615
BINDING SITE FOR RESIDUE GOL B 6202
078
IC6
SOFTWARE
GLU B:117 , ILE B:118 , GLY B:207 , VAL B:208 , PHE B:243 , ASP B:295 , EDO B:6048 , HOH B:6924 , HOH B:6929
BINDING SITE FOR RESIDUE GOL B 6302
079
IC7
SOFTWARE
PRO C:116 , VAL C:208 , ASN C:209 , LEU C:210 , VAL C:215 , ARG C:245 , GLU C:299 , HOH C:6865
BINDING SITE FOR RESIDUE GOL C 6203
080
IC8
SOFTWARE
GLU C:117 , ILE C:118 , GLY C:207 , VAL C:208 , PHE C:243 , ASP C:295 , HOH C:6693
BINDING SITE FOR RESIDUE GOL C 6303
081
IC9
SOFTWARE
PRO D:116 , ASN D:209 , LEU D:210 , VAL D:215 , ARG D:245 , GLU D:299 , HOH D:6876 , HOH D:7068
BINDING SITE FOR RESIDUE GOL D 6204
082
JC1
SOFTWARE
GLU D:117 , ILE D:118 , GLY D:207 , VAL D:208 , PHE D:243 , ASP D:295 , HOH D:6810 , HOH D:7073
BINDING SITE FOR RESIDUE GOL D 6304
083
JC2
SOFTWARE
PRO E:116 , ASN E:209 , LEU E:210 , VAL E:215 , ARG E:245 , GLU E:299 , HOH E:3598 , HOH E:3601
BINDING SITE FOR RESIDUE GOL E 6205
084
JC3
SOFTWARE
GLU E:117 , ILE E:118 , GLY E:207 , VAL E:208 , PHE E:243 , ASP E:295 , HOH E:3432
BINDING SITE FOR RESIDUE GOL E 6305
085
JC4
SOFTWARE
PRO F:116 , VAL F:208 , ASN F:209 , LEU F:210 , VAL F:215 , ARG F:245 , GLU F:299 , HOH F:6927
BINDING SITE FOR RESIDUE GOL F 6206
086
JC5
SOFTWARE
GLU F:117 , ILE F:118 , GLY F:207 , VAL F:208 , PHE F:243 , ASP F:295 , GOL F:6057 , HOH F:6523 , HOH F:6679
BINDING SITE FOR RESIDUE GOL F 6306
087
JC6
SOFTWARE
PRO G:116 , VAL G:208 , ASN G:209 , LEU G:210 , VAL G:215 , ARG G:245 , GLU G:299 , HOH G:4188 , HOH G:4189 , GOL G:6307
BINDING SITE FOR RESIDUE GOL G 6207
088
JC7
SOFTWARE
GLU G:117 , ILE G:118 , GLY G:207 , VAL G:208 , PHE G:243 , ASP G:295 , HOH G:2776 , GOL G:6207
BINDING SITE FOR RESIDUE GOL G 6307
089
JC8
SOFTWARE
PRO H:116 , ASN H:209 , LEU H:210 , VAL H:215 , ARG H:245 , GLU H:299 , HOH H:7028 , HOH H:7059 , HOH H:7103
BINDING SITE FOR RESIDUE GOL H 6208
090
JC9
SOFTWARE
GLU H:117 , ILE H:118 , GLY H:207 , VAL H:208 , PHE H:243 , ASP H:295 , HOH H:6673
BINDING SITE FOR RESIDUE GOL H 6308
091
KC1
SOFTWARE
LYS F:229 , GLU F:233 , ILE F:256 , LEU F:257 , LYS F:260 , HOH F:6610 , HOH F:6611
BINDING SITE FOR RESIDUE GOL F 6001
092
KC2
SOFTWARE
ARG A:42 , LYS A:65 , SER A:66 , GLY A:67 , HIS A:378 , HOH A:6844 , HOH A:7129 , HOH A:7141
BINDING SITE FOR RESIDUE GOL A 6002
093
KC3
SOFTWARE
ALA G:37 , PRO G:38 , ILE G:39 , THR G:40 , ARG G:382 , HOH G:3521 , HOH G:3733
BINDING SITE FOR RESIDUE GOL G 6004
094
KC4
SOFTWARE
ARG F:42 , LYS F:65 , SER F:66 , GLY F:67 , HIS F:378 , HOH F:6638 , HOH F:6642 , HOH F:7067 , HOH F:7071
BINDING SITE FOR RESIDUE GOL F 6005
095
KC5
SOFTWARE
ILE H:64 , PHE H:97 , LEU H:103 , ARG H:105 , ARG H:499 , HOH H:6896 , HOH H:6963
BINDING SITE FOR RESIDUE GOL H 6006
096
KC6
SOFTWARE
ARG B:42 , LYS B:65 , SER B:66 , GLY B:67 , HIS B:378 , HOH B:6757 , HOH B:6762
BINDING SITE FOR RESIDUE GOL B 6007
097
KC7
SOFTWARE
ARG H:42 , LYS H:65 , SER H:66 , GLY H:67 , HIS H:378 , HOH H:6551 , HOH H:6895 , HOH H:7069
BINDING SITE FOR RESIDUE GOL H 6008
098
KC8
SOFTWARE
ASP F:177 , GLN F:328 , HOH F:6677 , HOH F:7070 , ARG H:338 , PRO H:339 , ARG H:341 , HOH H:6777
BINDING SITE FOR RESIDUE GOL F 6010
099
KC9
SOFTWARE
PRO E:52 , HOH E:2717 , HOH E:2718 , HOH E:4678 , HOH E:4816 , EDO E:6045 , PRO H:52 , ARG H:55 , TYR H:82 , EDO H:6054 , HOH H:6661
BINDING SITE FOR RESIDUE GOL E 6031
100
LC1
SOFTWARE
ILE C:64 , PHE C:97 , LEU C:103 , TYR C:104 , ARG C:105 , ARG C:499 , HOH C:6538 , HOH C:6540 , HOH C:6778 , HOH C:6946
BINDING SITE FOR RESIDUE GOL C 6055
101
LC2
SOFTWARE
GLU C:417 , TYR C:420 , LYS C:421 , HOH C:6582 , HOH C:6584 , HOH C:7019 , HOH C:7054 , ALA D:398 , HOH D:7028
BINDING SITE FOR RESIDUE GOL C 6056
102
LC3
SOFTWARE
ASP F:177 , GLY F:294 , ASP F:295 , ILE F:298 , PYR F:600 , GOL F:6306 , HOH F:6523
BINDING SITE FOR RESIDUE GOL F 6057
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: PYRUVATE_KINASE (A:264-276,B:264-276,C:264-276,D:26...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRUVATE_KINASE
PS00110
Pyruvate kinase active site signature.
KPYM_RABIT
265-277
8
A:264-276
B:264-276
C:264-276
D:264-276
E:264-276
F:264-276
G:264-276
H:264-276
[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d2g50a1 (A:116-217)
1b: SCOP_d2g50b1 (B:116-217)
1c: SCOP_d2g50c1 (C:116-217)
1d: SCOP_d2g50d1 (D:116-217)
1e: SCOP_d2g50e1 (E:116-217)
1f: SCOP_d2g50f1 (F:116-217)
1g: SCOP_d2g50g1 (G:116-217)
1h: SCOP_d2g50h1 (H:116-217)
2a: SCOP_d2g50a3 (A:396-530)
2b: SCOP_d2g50b3 (B:396-530)
2c: SCOP_d2g50c3 (C:396-530)
2d: SCOP_d2g50d3 (D:396-530)
2e: SCOP_d2g50e3 (E:396-530)
2f: SCOP_d2g50f3 (F:396-530)
2g: SCOP_d2g50g3 (G:396-530)
2h: SCOP_d2g50h3 (H:396-530)
3a: SCOP_d2g50a2 (A:12-115,A:218-395)
3b: SCOP_d2g50b2 (B:12-115,B:218-395)
3c: SCOP_d2g50c2 (C:12-115,C:218-395)
3d: SCOP_d2g50d2 (D:12-115,D:218-395)
3e: SCOP_d2g50e2 (E:12-115,E:218-395)
3f: SCOP_d2g50f2 (F:12-115,F:218-395)
3g: SCOP_d2g50g2 (G:12-115,G:218-395)
3h: SCOP_d2g50h2 (H:12-115,H:218-395)
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Classes
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)
(
)
Folds
(
)
(
)
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PK beta-barrel domain-like
(31)
Superfamily
:
PK beta-barrel domain-like
(31)
Family
:
Pyruvate kinase beta-barrel domain
(28)
Protein domain
:
Pyruvate kinase (PK)
(28)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(7)
1a
d2g50a1
A:116-217
1b
d2g50b1
B:116-217
1c
d2g50c1
C:116-217
1d
d2g50d1
D:116-217
1e
d2g50e1
E:116-217
1f
d2g50f1
F:116-217
1g
d2g50g1
G:116-217
1h
d2g50h1
H:116-217
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Pyruvate kinase C-terminal domain-like
(59)
Superfamily
:
PK C-terminal domain-like
(30)
Family
:
Pyruvate kinase, C-terminal domain
(28)
Protein domain
:
Pyruvate kinase, C-terminal domain
(28)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(7)
2a
d2g50a3
A:396-530
2b
d2g50b3
B:396-530
2c
d2g50c3
C:396-530
2d
d2g50d3
D:396-530
2e
d2g50e3
E:396-530
2f
d2g50f3
F:396-530
2g
d2g50g3
G:396-530
2h
d2g50h3
H:396-530
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Phosphoenolpyruvate/pyruvate domain
(92)
Family
:
Pyruvate kinase
(28)
Protein domain
:
Pyruvate kinase, N-terminal domain
(28)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(7)
3a
d2g50a2
A:12-115,A:218-395
3b
d2g50b2
B:12-115,B:218-395
3c
d2g50c2
C:12-115,C:218-395
3d
d2g50d2
D:12-115,D:218-395
3e
d2g50e2
E:12-115,E:218-395
3f
d2g50f2
F:12-115,F:218-395
3g
d2g50g2
G:12-115,G:218-395
3h
d2g50h2
H:12-115,H:218-395
[
close SCOP info
]
CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_2g50A01 (A:12-41,A:385-530)
1b: CATH_2g50C01 (C:12-41,C:385-530)
1c: CATH_2g50B01 (B:11-41,B:385-530)
1d: CATH_2g50F01 (F:11-41,F:385-530)
1e: CATH_2g50G01 (G:11-41,G:385-530)
1f: CATH_2g50H01 (H:11-41,H:385-530)
1g: CATH_2g50D01 (D:10-41,D:385-530)
1h: CATH_2g50E01 (E:10-41,E:385-530)
2a: CATH_2g50A02 (A:42-115,A:219-384)
2b: CATH_2g50B02 (B:42-115,B:219-384)
2c: CATH_2g50C02 (C:42-115,C:219-384)
2d: CATH_2g50D02 (D:42-115,D:219-384)
2e: CATH_2g50E02 (E:42-115,E:219-384)
2f: CATH_2g50F02 (F:42-115,F:219-384)
2g: CATH_2g50G02 (G:42-115,G:219-384)
2h: CATH_2g50H02 (H:42-115,H:219-384)
3a: CATH_2g50F03 (F:116-218)
3b: CATH_2g50C03 (C:116-218)
3c: CATH_2g50H03 (H:116-218)
3d: CATH_2g50A03 (A:116-218)
3e: CATH_2g50D03 (D:116-218)
3f: CATH_2g50E03 (E:116-218)
3g: CATH_2g50B03 (B:116-218)
3h: CATH_2g50G03 (G:116-218)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Pyruvate Kinase; Chain: A, domain 1
(36)
Homologous Superfamily
:
[code=3.40.1380.20, no name defined]
(20)
Rabbit (Oryctolagus cuniculus)
(7)
1a
2g50A01
A:12-41,A:385-530
1b
2g50C01
C:12-41,C:385-530
1c
2g50B01
B:11-41,B:385-530
1d
2g50F01
F:11-41,F:385-530
1e
2g50G01
G:11-41,G:385-530
1f
2g50H01
H:11-41,H:385-530
1g
2g50D01
D:10-41,D:385-530
1h
2g50E01
E:10-41,E:385-530
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Phosphoenolpyruvate-binding domains
(67)
Rabbit (Oryctolagus cuniculus)
(7)
2a
2g50A02
A:42-115,A:219-384
2b
2g50B02
B:42-115,B:219-384
2c
2g50C02
C:42-115,C:219-384
2d
2g50D02
D:42-115,D:219-384
2e
2g50E02
E:42-115,E:219-384
2f
2g50F02
F:42-115,F:219-384
2g
2g50G02
G:42-115,G:219-384
2h
2g50H02
H:42-115,H:219-384
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
M1 Pyruvate Kinase; Domain 3
(24)
Homologous Superfamily
:
M1 Pyruvate Kinase; Domain 3
(20)
Rabbit (Oryctolagus cuniculus)
(7)
3a
2g50F03
F:116-218
3b
2g50C03
C:116-218
3c
2g50H03
H:116-218
3d
2g50A03
A:116-218
3e
2g50D03
D:116-218
3f
2g50E03
E:116-218
3g
2g50B03
B:116-218
3h
2g50G03
G:116-218
[
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Pfam Domains
(0, 0)
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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show SS bonds with a radius of 100 units (=0.4Å)
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