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2G3L
Theor. Model
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Theoretical Model (334 KB)
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(1)
Title
:
THEORETICAL MODEL OF TETRAMER OF HIV-1 INTEGRASE WITH TWO VIRAL LTR ENDS
Authors
:
A. Chen, I. T. Weber, R. W. Harrison, J. Leis
Date
:
20 Feb 06 (Deposition) - 28 Mar 06 (Release) - 28 Mar 06 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B,C,D,E,F,G,H,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Protein-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Chen, I. T. Weber, R. W. Harrison, J. Leis
Identification Of Amino Acids In Hiv-1 And Avian Sarcoma Virus Integrase Subsites Required For Specific Recognition Of The Long Terminal Repeat Ends
J. Biol. Chem. V. 281 4173 2006
(for further references see the
PDB file header
)
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Hetero Components
(3, 12)
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All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
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No.
Name
Count
Type
Full Name
1
K
4
Ligand/Ion
POTASSIUM ION
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
ZN
4
Ligand/Ion
ZINC ION
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Sites
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PROSITE Patterns/Profiles
(3, 12)
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1: ZF_INTEGRASE (A:3-44,B:303-344,C:603-644,D:903-9...)
2: INTEGRASE (A:54-204,B:354-504,C:654-804,D:954...)
3: INTEGRASE_DBD (A:223-270,B:523-570,C:823-870,D:11...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_INTEGRASE
PS50876
Zinc finger integrase-type profile.
POL_HV1B5
1162-1203
4
A:3-44
B:303-344
C:603-644
D:903-944
2
INTEGRASE
PS50994
Integrase catalytic domain profile.
POL_HV1B5
1213-1363
4
A:54-204
B:354-504
C:654-804
D:954-1104
3
INTEGRASE_DBD
PS51027
Integrase DNA binding domain profile.
POL_HV1B5
1382-1429
4
A:223-270
B:523-570
C:823-870
D:1123-1170
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Exons
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