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2G26
Biol. Unit 4
Info
Asym.Unit (111 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (56 KB)
Biol.Unit 3 (315 KB)
Biol.Unit 4 (160 KB)
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(1)
Title
:
KETOPIPERAZINE-BASED RENIN INHIBITORS: OPTIMIZATION OF THE "C" RING
Authors
:
D. D. Holsworth, M. Jalaiea, E. Zhanga, P. Mcconnella
Date
:
15 Feb 06 (Deposition) - 13 Jun 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (3x)
Biol. Unit 4: B (3x)
Keywords
:
Protein-Ligand Complexes, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. D. Holsworth, C. Cai, X. M. Cheng, W. L. Cody, D. M. Downing, N. Erasga, C. Lee, N. A. Powell, J. J. Ednunds, M. Stier, M. Jalaie, E. Zhang, P. Mcconnell, M. J. Ryan, J. Bryant, T. Li, A. Kasani, E. Hall, R. Subedi, M. Rahim, S. Maiti
Ketopiperazine-Based Renin Inhibitors: Optimization Of The "C" Ring
Bioorg. Med. Chem. Lett. V. 16 2500 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: (5-{[(2R)-1-(4-{3-[(2-METHOXYBENZY... (3LGa)
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No.
Name
Count
Type
Full Name
1
3LG
3
Ligand/Ion
(5-{[(2R)-1-(4-{3-[(2-METHOXYBENZYL)OXY]PROPOXY}PHENYL)-6-OXOPIPERAZIN-2-YL]METHOXY}-1H-INDOL-1-YL)ACETIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN B:14 , ASP B:33 , GLY B:35 , TRP B:40 , PRO B:42 , TYR B:78 , VAL B:106 , MET B:109 , PRO B:113 , PHE B:114 , ALA B:117 , PHE B:119 , ASP B:120 , VAL B:122 , ASP B:219 , GLY B:221
BINDING SITE FOR RESIDUE 3LG B 805
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SAPs(SNPs)/Variants
(4, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_035088 (D33N, chain B, )
2: VAR_029171 (Q89K, chain B, )
3: VAR_020376 (G146R, chain B, )
4: VAR_035087 (R159K, chain B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035088
D
104
N
RENI_HUMAN
Disease (RTD)
---
B
D
33
N
2
UniProt
VAR_029171
Q
160
K
RENI_HUMAN
Polymorphism
11571083
B
Q
89
K
3
UniProt
VAR_020376
G
217
R
RENI_HUMAN
Polymorphism
11571117
B
G
146
R
4
UniProt
VAR_035087
R
230
K
RENI_HUMAN
Disease (RTD)
---
B
R
159
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 9)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_A1 (B:15-330)
2: ASP_PROTEASE (B:216-227)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_A1
PS51767
Peptidase family A1 domain profile.
RENI_HUMAN
86-403
3
-
B:15-330
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
RENI_HUMAN
101-112
289-300
6
-
B:30-41
-
B:216-227
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2g26a_ (A:)
1b: SCOP_d2g26b_ (B:)
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Pepsin-like
(505)
Protein domain
:
Chymosin (synonym: renin)
(67)
Human (Homo sapiens) [TaxId: 9606]
(60)
1a
d2g26a_
A:
1b
d2g26b_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2g26A02 (A:175-332)
1b: CATH_2g26B02 (B:175-332)
1c: CATH_2g26A01 (A:3-174)
1d: CATH_2g26B01 (B:3-174)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Human (Homo sapiens)
(161)
1a
2g26A02
A:175-332
1b
2g26B02
B:175-332
1c
2g26A01
A:3-174
1d
2g26B01
B:3-174
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Pfam Domains
(0, 0)
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Show PDB file:
Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (55 KB)
Header - Biol.Unit 1
Biol.Unit 2 (56 KB)
Header - Biol.Unit 2
Biol.Unit 3 (315 KB)
Header - Biol.Unit 3
Biol.Unit 4 (160 KB)
Header - Biol.Unit 4
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