PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2G0N
Asym. Unit
Info
Asym.Unit (70 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (33 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE CRYSTAL STRUCTURE OF THE HUMAN RAC3 IN COMPLEX WITH GDP AND CHLORIDE
Authors
:
E. Ugochukwu, X. Yang, Y. Zao, J. Elkins, C. Gileadi, N. Burgess, S. Cole O. Gileadi, O. Fedorov, G. Bunkoczi, M. Sundstrom, C. Arrowsmith, J. W A. Edwards, F. Von Delft, D. Doyle, Structural Genomics Consortiu
Date
:
13 Feb 06 (Deposition) - 30 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gtpase Rac3A, Small Gtp Binding Protein, P21 Rac, Ras-Related C3 Botulinum Toxin Substrate 3, Signalling Protein, Structural Genomics, Structural Genomics Consortium, Sgc, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Ugochukwu, X. Yang, Y. Zao, J. Elkins, C. Gileadi, N. Burgess, S. Colebrook, O. Gileadi, O. Fedorov, G. Bunkoczi, M. Sundstrom, C. Arrowsmith, J. Weigelt, A. Edwards, F. Von Delft, D. Doyle
The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride
To Be Published
[
close entry info
]
Hetero Components
(3, 7)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR B:17 , GDP B:502 , HOH B:737 , HOH B:742 , HOH B:815 , HOH B:818
BINDING SITE FOR RESIDUE MG B 601
2
AC2
SOFTWARE
THR A:17 , GDP A:501 , HOH A:748 , HOH A:788 , HOH A:844 , HOH A:847
BINDING SITE FOR RESIDUE MG A 602
3
AC3
SOFTWARE
GLY B:12 , LYS B:16 , GLY B:60 , GLN B:61 , GDP B:502 , HOH B:815
BINDING SITE FOR RESIDUE CL B 701
4
AC4
SOFTWARE
GLY A:12 , LYS A:16 , GLY A:60 , GLN A:61 , GDP A:501 , HOH A:844
BINDING SITE FOR RESIDUE CL A 702
5
AC5
SOFTWARE
SER A:151
BINDING SITE FOR RESIDUE CL A 703
6
AC6
SOFTWARE
ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , PHE A:28 , ILE A:33 , LYS A:116 , ASP A:118 , LEU A:119 , SER A:158 , ALA A:159 , LEU A:160 , MG A:602 , CL A:702 , HOH A:718 , HOH A:727 , HOH A:796 , HOH A:798 , HOH A:844 , HOH A:847 , TYR B:64
BINDING SITE FOR RESIDUE GDP A 501
7
AC7
SOFTWARE
TYR A:64 , ALA B:13 , VAL B:14 , GLY B:15 , LYS B:16 , THR B:17 , CYS B:18 , PHE B:28 , ILE B:33 , LYS B:116 , ASP B:118 , LEU B:119 , SER B:158 , ALA B:159 , LEU B:160 , MG B:601 , CL B:701 , HOH B:706 , HOH B:724 , HOH B:742 , HOH B:803 , HOH B:818
BINDING SITE FOR RESIDUE GDP B 502
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RHO (A:1-176,B:1-176)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC3_HUMAN
1-176
2
A:1-176
B:1-176
[
close PROSITE info
]
Exons
(6, 12)
Info
All Exons
Exon 1.1 (A:1-12 | B:1-12)
Exon 1.2 (A:12-36 | B:12-36)
Exon 1.3 (A:36-75 | B:36-75)
Exon 1.4 (A:76-96 | B:76-96)
Exon 1.5 (A:97-150 | B:97-150)
Exon 1.6 (A:150-178 | B:150-178)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000306897
1
ENSE00001289808
chr17:
79989532-79989672
141
RAC3_HUMAN
1-12
12
2
A:1-12
B:1-12
12
12
1.2
ENST00000306897
2
ENSE00001328203
chr17:
79990263-79990334
72
RAC3_HUMAN
12-36
25
2
A:12-36
B:12-36
25
25
1.3
ENST00000306897
3
ENSE00001164123
chr17:
79990587-79990704
118
RAC3_HUMAN
36-75
40
2
A:36-75
B:36-75
40
40
1.4
ENST00000306897
4
ENSE00001164119
chr17:
79990823-79990885
63
RAC3_HUMAN
76-96
21
2
A:76-96
B:76-96
21
21
1.5
ENST00000306897
5
ENSE00001779448
chr17:
79991316-79991475
160
RAC3_HUMAN
97-150
54
2
A:97-150
B:97-150
54
54
1.6
ENST00000306897
6
ENSE00001314642
chr17:
79991575-79992077
503
RAC3_HUMAN
150-192
43
2
A:150-178
B:150-178
29
29
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2g0na_ (A:)
1b: SCOP_d2g0nb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Human (Homo sapiens) [TaxId: 9606]
(112)
1a
d2g0na_
A:
1b
d2g0nb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2g0nA00 (A:0-178)
1b: CATH_2g0nB00 (B:1-178)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2g0nA00
A:0-178
1b
2g0nB00
B:1-178
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (70 KB)
Header - Asym.Unit
Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
Biol.Unit 2 (33 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2G0N
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
