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2FYT
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (111 KB)
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(1)
Title
:
HUMAN HMT1 HNRNP METHYLTRANSFERASE-LIKE 3 (S. CEREVISIAE) PROTEIN
Authors
:
J. R. Min, H. Wu, H. Zeng, P. Loppnau, M. Sundstrom, C. H. Arrowsmith, A. M A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (S
Date
:
08 Feb 06 (Deposition) - 14 Mar 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Methyltransferase, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Wu, J. R. Min, H. Zeng, P. Loppnau, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov
The Crystal Structure Of Human Hmt1 Hnrnp Methyltransferase-Like 3 In Complex With Sah.
To Be Published
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:241 , HIS A:247 , MET A:250 , ARG A:256 , GLY A:280 , CYS A:281 , ILE A:285 , LEU A:286 , ASP A:302 , GLN A:303 , SER A:304 , GLY A:328 , LYS A:329 , ILE A:330 , GLU A:331 , GLU A:346 , MET A:357 , SER A:360 , HOH A:550 , HOH A:552 , HOH A:562 , HOH A:582
BINDING SITE FOR RESIDUE SAH A 549
[
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]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024584 (L457V, chain A, )
2: VAR_030943 (S487C, chain A, )
3: VAR_024585 (N525N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024584
L
440
V
ANM3_HUMAN
Polymorphism
3758805
A
L
457
V
2
UniProt
VAR_030943
S
470
C
ANM3_HUMAN
Polymorphism
11025585
A
S
487
C
3
UniProt
VAR_024585
S
508
N
ANM3_HUMAN
Polymorphism
6483700
A
N
525
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(10, 10)
Info
All Exons
Exon 1.7b (A:238-252)
Exon 1.8 (A:253-274)
Exon 1.9b (A:275-315)
Exon 1.10 (A:315-348)
Exon 1.11 (A:349-375)
Exon 1.12 (A:375-437)
Exon 1.13 (A:438-466)
Exon 1.14 (A:467-483)
Exon 1.15 (A:484-513)
Exon 1.16b (A:513-548)
View:
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All Exon Boundaries
01: Boundary 1.6/1.7b
02: Boundary 1.7b/1.8
03: Boundary 1.8/1.9b
04: Boundary 1.9b/1.10
05: Boundary 1.10/1.11
06: Boundary 1.11/1.12
07: Boundary 1.12/1.13
08: Boundary 1.13/1.14
09: Boundary 1.14/1.15
10: Boundary 1.15/1.16b
11: Boundary 1.16b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000331079
1a
ENSE00002150419
chr11:
20409076-20409320
245
ANM3_HUMAN
1-10
10
0
-
-
1.1f
ENST00000331079
1f
ENSE00001293242
chr11:
20409565-20409700
136
ANM3_HUMAN
10-55
46
0
-
-
1.2
ENST00000331079
2
ENSE00001797621
chr11:
20411290-20411372
83
ANM3_HUMAN
55-83
29
0
-
-
1.3b
ENST00000331079
3b
ENSE00001297538
chr11:
20413757-20413806
50
ANM3_HUMAN
83-99
17
0
-
-
1.4
ENST00000331079
4
ENSE00001314511
chr11:
20414443-20414545
103
ANM3_HUMAN
100-134
35
0
-
-
1.6
ENST00000331079
6
ENSE00001291287
chr11:
20417349-20417508
160
ANM3_HUMAN
134-187
54
0
-
-
1.7b
ENST00000331079
7b
ENSE00001318617
chr11:
20419123-20419267
145
ANM3_HUMAN
187-235
49
1
A:238-252
15
1.8
ENST00000331079
8
ENSE00001314116
chr11:
20424465-20424530
66
ANM3_HUMAN
236-257
22
1
A:253-274
22
1.9b
ENST00000331079
9b
ENSE00001290930
chr11:
20429457-20429578
122
ANM3_HUMAN
258-298
41
1
A:275-315
41
1.10
ENST00000331079
10
ENSE00001318398
chr11:
20448312-20448411
100
ANM3_HUMAN
298-331
34
1
A:315-348
34
1.11
ENST00000331079
11
ENSE00001294882
chr11:
20473676-20473754
79
ANM3_HUMAN
332-358
27
1
A:349-375
27
1.12
ENST00000331079
12
ENSE00001311854
chr11:
20483526-20483713
188
ANM3_HUMAN
358-420
63
1
A:375-437
63
1.13
ENST00000331079
13
ENSE00001327931
chr11:
20486006-20486092
87
ANM3_HUMAN
421-449
29
1
A:438-466
29
1.14
ENST00000331079
14
ENSE00001291109
chr11:
20515465-20515515
51
ANM3_HUMAN
450-466
17
1
A:467-483
17
1.15
ENST00000331079
15
ENSE00001310698
chr11:
20515713-20515800
88
ANM3_HUMAN
467-496
30
1
A:484-513
30
1.16b
ENST00000331079
16b
ENSE00002195347
chr11:
20529850-20530799
950
ANM3_HUMAN
496-531
36
1
A:513-548
36
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2fyta1 (A:238-548)
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Classes
(
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Folds
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
Arginine methyltransferase
(9)
Protein domain
:
Protein arginine N-methyltransferase 3, PRMT3
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2fyta1
A:238-548
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2fytA01 (A:238-377)
2a: CATH_2fytA02 (A:379-548)
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(
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Human (Homo sapiens)
(49)
1a
2fytA01
A:238-377
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Hnrnp arginine n-methyltransferase1
(6)
Homologous Superfamily
:
Hnrnp arginine n-methyltransferase1
(6)
Human (Homo sapiens)
(1)
2a
2fytA02
A:379-548
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein
Nucleic
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (63 KB)
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