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2FYN
Asym. Unit
Info
Asym.Unit (867 KB)
Biol.Unit 1 (290 KB)
Biol.Unit 2 (290 KB)
Biol.Unit 3 (290 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE DOUBLE MUTANT RHODOBACTER SPHAEROIDES BC1 COMPLEX
Authors
:
L. Esser, D. Xia
Date
:
08 Feb 06 (Deposition) - 29 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: M,N,O,P,Q,R (1x)
Keywords
:
Transmembrane Helices, Functional Dimer, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Esser, X. Gong, S. Yang, L. Yu, C. A. Yu, D. Xia
Surface-Modulated Motion Switch: Capture And Release Of Iron-Sulfur Protein In The Cytochrome Bc1 Complex.
Proc. Natl. Acad. Sci. Usa V. 103 13045 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 36)
Info
All Hetero Components
1a: FE2/S2 (INORGANIC) CLUSTER (FESa)
1b: FE2/S2 (INORGANIC) CLUSTER (FESb)
1c: FE2/S2 (INORGANIC) CLUSTER (FESc)
1d: FE2/S2 (INORGANIC) CLUSTER (FESd)
1e: FE2/S2 (INORGANIC) CLUSTER (FESe)
1f: FE2/S2 (INORGANIC) CLUSTER (FESf)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
2h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
2i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
2j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
2k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
2l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
2m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
2n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
2o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
2p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
2q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
2r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
3a: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPa)
3b: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPb)
3c: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPc)
3d: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPd)
3e: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPe)
3f: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPf)
4a: STIGMATELLIN A (SMAa)
4b: STIGMATELLIN A (SMAb)
4c: STIGMATELLIN A (SMAc)
4d: STIGMATELLIN A (SMAd)
4e: STIGMATELLIN A (SMAe)
4f: STIGMATELLIN A (SMAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FES
6
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
2
HEM
18
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
LOP
6
Ligand/Ion
(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE
4
SMA
6
Ligand/Ion
STIGMATELLIN A
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:45 , GLY A:48 , LEU A:51 , ALA A:52 , VAL A:108 , HIS A:111 , ARG A:114 , ARG A:125 , THR A:128 , TRP A:129 , GLY A:132 , MET A:133 , ILE A:135 , TYR A:136 , VAL A:209 , HIS A:212 , PHE A:216 , THR A:219 , GLY A:220 , ASN A:222
BINDING SITE FOR RESIDUE HEM A 501
02
AC2
SOFTWARE
GLN A:58 , ILE A:59 , GLY A:62 , ILE A:63 , LEU A:65 , ARG A:94 , HIS A:97 , ALA A:98 , THR A:142 , GLY A:146 , LEU A:149 , PRO A:150 , HIS A:198 , TYR A:199 , PRO A:202
BINDING SITE FOR RESIDUE HEM A 502
03
AC3
SOFTWARE
VAL B:35 , CYS B:36 , CYS B:39 , HIS B:40 , LEU B:94 , ASN B:96 , PRO B:98 , MET B:103 , ARG B:107 , TYR B:130 , ALA B:184 , MET B:185 , PRO B:188
BINDING SITE FOR RESIDUE HEM B 301
04
AC4
SOFTWARE
CYS C:129 , HIS C:131 , LEU C:132 , GLY C:133 , CYS C:149 , HIS C:152 , SER C:154
BINDING SITE FOR RESIDUE FES C 200
05
AC5
SOFTWARE
TRP D:45 , GLY D:48 , LEU D:51 , ALA D:52 , VAL D:108 , HIS D:111 , ARG D:114 , ARG D:125 , THR D:128 , TRP D:129 , GLY D:132 , MET D:133 , ILE D:135 , TYR D:136 , VAL D:209 , HIS D:212 , PHE D:216 , GLY D:220 , ASN D:221 , ASN D:222
BINDING SITE FOR RESIDUE HEM D 501
06
AC6
SOFTWARE
GLN D:58 , GLY D:62 , ILE D:63 , ARG D:94 , HIS D:97 , THR D:142 , ALA D:143 , GLY D:146 , TYR D:147 , LEU D:149 , PRO D:150 , HIS D:198 , TYR D:199 , PRO D:202
BINDING SITE FOR RESIDUE HEM D 502
07
AC7
SOFTWARE
VAL E:35 , CYS E:36 , CYS E:39 , HIS E:40 , LEU E:94 , ASN E:96 , PRO E:98 , MET E:103 , ARG E:107 , TYR E:130 , LEU E:135 , PHE E:160 , ILE E:183 , MET E:185 , PRO E:188
BINDING SITE FOR RESIDUE HEM E 301
08
AC8
SOFTWARE
CYS F:129 , HIS F:131 , LEU F:132 , GLY F:133 , CYS F:149 , HIS F:152 , SER F:154
BINDING SITE FOR RESIDUE FES F 200
09
AC9
SOFTWARE
TRP G:45 , GLY G:48 , LEU G:51 , ALA G:52 , VAL G:108 , HIS G:111 , ILE G:112 , ARG G:114 , ARG G:125 , THR G:128 , TRP G:129 , GLY G:132 , MET G:133 , ILE G:135 , TYR G:136 , VAL G:209 , HIS G:212 , PHE G:216 , ASN G:222
BINDING SITE FOR RESIDUE HEM G 501
10
BC1
SOFTWARE
GLN G:58 , GLY G:62 , ILE G:63 , VAL G:80 , ARG G:94 , HIS G:97 , THR G:142 , ALA G:143 , GLY G:146 , TYR G:147 , PRO G:150 , HIS G:198 , TYR G:199 , PRO G:202
BINDING SITE FOR RESIDUE HEM G 502
11
BC2
SOFTWARE
VAL H:35 , CYS H:36 , CYS H:39 , HIS H:40 , ASN H:96 , PRO H:98 , MET H:103 , ARG H:107 , TYR H:130 , ILE H:183 , ALA H:184 , MET H:185 , PRO H:188
BINDING SITE FOR RESIDUE HEM H 301
12
BC3
SOFTWARE
CYS I:129 , HIS I:131 , LEU I:132 , GLY I:133 , CYS I:134 , CYS I:149 , HIS I:152 , SER I:154
BINDING SITE FOR RESIDUE FES I 200
13
BC4
SOFTWARE
TRP J:45 , GLY J:48 , LEU J:51 , ALA J:52 , VAL J:108 , HIS J:111 , ARG J:114 , ARG J:125 , THR J:128 , TRP J:129 , GLY J:132 , MET J:133 , ILE J:135 , TYR J:136 , VAL J:209 , HIS J:212 , PHE J:216 , GLY J:220 , ASN J:222
BINDING SITE FOR RESIDUE HEM J 501
14
BC5
SOFTWARE
GLN J:58 , GLY J:62 , ILE J:63 , ARG J:94 , HIS J:97 , ALA J:101 , THR J:142 , GLY J:146 , TYR J:147 , PRO J:150 , HIS J:198 , TYR J:199 , PRO J:202
BINDING SITE FOR RESIDUE HEM J 502
15
BC6
SOFTWARE
VAL K:35 , CYS K:36 , CYS K:39 , HIS K:40 , ASN K:96 , PRO K:98 , MET K:103 , ARG K:107 , TYR K:130 , LEU K:135 , ILE K:183 , ALA K:184 , MET K:185 , PRO K:188
BINDING SITE FOR RESIDUE HEM K 301
16
BC7
SOFTWARE
CYS L:129 , HIS L:131 , LEU L:132 , GLY L:133 , CYS L:134 , CYS L:149 , HIS L:152 , SER L:154
BINDING SITE FOR RESIDUE FES L 200
17
BC8
SOFTWARE
TRP M:45 , GLY M:48 , LEU M:51 , ALA M:52 , VAL M:108 , HIS M:111 , ILE M:112 , ARG M:114 , SER M:120 , ARG M:125 , TRP M:129 , GLY M:132 , MET M:133 , ILE M:135 , TYR M:136 , VAL M:209 , HIS M:212 , PHE M:216 , ASN M:221 , ASN M:222
BINDING SITE FOR RESIDUE HEM M 501
18
BC9
SOFTWARE
GLN M:58 , GLY M:62 , ILE M:63 , ARG M:94 , HIS M:97 , ALA M:98 , THR M:142 , GLY M:146 , LEU M:149 , PRO M:150 , PHE M:195 , HIS M:198 , TYR M:199 , PRO M:202
BINDING SITE FOR RESIDUE HEM M 502
19
CC1
SOFTWARE
VAL N:35 , CYS N:36 , CYS N:39 , HIS N:40 , LEU N:94 , ASN N:96 , PRO N:98 , ARG N:107 , ILE N:131 , LEU N:135 , PHE N:160 , ILE N:183 , ALA N:184 , MET N:185
BINDING SITE FOR RESIDUE HEM N 301
20
CC2
SOFTWARE
CYS O:129 , HIS O:131 , LEU O:132 , GLY O:133 , CYS O:149 , HIS O:152 , SER O:154
BINDING SITE FOR RESIDUE FES O 200
21
CC3
SOFTWARE
TRP P:45 , GLY P:48 , LEU P:51 , ALA P:52 , VAL P:108 , HIS P:111 , ARG P:114 , SER P:120 , ARG P:125 , THR P:128 , TRP P:129 , GLY P:132 , MET P:133 , ILE P:135 , TYR P:136 , VAL P:209 , HIS P:212 , PHE P:216 , THR P:219 , ASN P:221 , ASN P:222
BINDING SITE FOR RESIDUE HEM P 501
22
CC4
SOFTWARE
GLN P:58 , GLY P:62 , ILE P:63 , LEU P:65 , ARG P:94 , HIS P:97 , ALA P:101 , THR P:142 , GLY P:146 , TYR P:147 , LEU P:149 , PRO P:150 , HIS P:198 , TYR P:199 , PRO P:202
BINDING SITE FOR RESIDUE HEM P 502
23
CC5
SOFTWARE
VAL Q:35 , CYS Q:36 , CYS Q:39 , HIS Q:40 , LEU Q:94 , ASN Q:96 , PRO Q:98 , MET Q:103 , ARG Q:107 , TYR Q:130 , ILE Q:131 , LEU Q:135 , ILE Q:183 , ALA Q:184 , MET Q:185 , PRO Q:188
BINDING SITE FOR RESIDUE HEM Q 301
24
CC6
SOFTWARE
CYS R:129 , HIS R:131 , LEU R:132 , GLY R:133 , CYS R:149 , HIS R:152 , SER R:154
BINDING SITE FOR RESIDUE FES R 200
25
CC7
SOFTWARE
PHE A:144 , GLY A:158 , VAL A:161 , ILE A:162 , ILE A:292 , VAL A:293 , PRO A:294 , GLU A:295 , PHE A:298 , PHE A:301 , TYR A:302 , PHE A:337 , ILE A:340 , CYS F:151 , HIS F:152
BINDING SITE FOR RESIDUE SMA A 503
26
CC8
SOFTWARE
CYS C:151 , HIS C:152 , MET D:140 , GLY D:158 , VAL D:161 , ILE D:162 , ILE D:292 , PRO D:294 , GLU D:295 , PHE D:298 , TYR D:302 , MET D:336 , PHE D:337
BINDING SITE FOR RESIDUE SMA D 503
27
CC9
SOFTWARE
PHE G:144 , GLY G:158 , VAL G:161 , ILE G:162 , PHE G:194 , ILE G:292 , VAL G:293 , PRO G:294 , GLU G:295 , PHE G:298 , TYR G:302 , PHE G:337 , HIS L:152
BINDING SITE FOR RESIDUE SMA G 503
28
DC1
SOFTWARE
CYS I:151 , HIS I:152 , MET J:140 , PHE J:144 , GLY J:158 , VAL J:161 , ILE J:162 , ILE J:292 , VAL J:293 , PRO J:294 , GLU J:295 , PHE J:298 , TYR J:302 , MET J:336
BINDING SITE FOR RESIDUE SMA J 503
29
DC2
SOFTWARE
PHE M:144 , GLY M:158 , VAL M:161 , ILE M:162 , PHE M:194 , VAL M:293 , PRO M:294 , GLU M:295 , PHE M:298 , TYR M:302 , HIS R:152
BINDING SITE FOR RESIDUE SMA M 503
30
DC3
SOFTWARE
CYS O:151 , HIS O:152 , MET P:145 , GLY P:158 , VAL P:161 , ILE P:162 , LEU P:180 , ILE P:292 , PRO P:294 , GLU P:295 , PHE P:298 , TYR P:302 , MET P:336 , PHE P:337
BINDING SITE FOR RESIDUE SMA P 503
31
DC4
SOFTWARE
MET A:44 , TYR A:117 , TYR A:118 , PHE A:263 , ARG A:358 , PHE A:374
BINDING SITE FOR RESIDUE LOP A 504
32
DC5
SOFTWARE
PHE D:113 , ARG D:114 , TYR D:117 , TYR D:118 , LEU D:274 , ARG D:358 , TRP D:368 , PHE D:374
BINDING SITE FOR RESIDUE LOP D 504
33
DC6
SOFTWARE
MET G:44 , TRP G:47 , ASN G:99 , LEU G:103 , ILE G:106 , PHE G:113 , TYR G:117 , TYR G:118 , ARG G:358
BINDING SITE FOR RESIDUE LOP G 504
34
DC7
SOFTWARE
MET J:44 , PHE J:113 , TYR J:117 , TYR J:118 , VAL J:262 , PHE J:263 , ARG J:358 , PHE J:374
BINDING SITE FOR RESIDUE LOP J 504
35
DC8
SOFTWARE
MET M:44 , PHE M:113 , TYR M:117 , TYR M:118 , ARG M:358 , PHE M:374
BINDING SITE FOR RESIDUE LOP M 504
36
DC9
SOFTWARE
PHE P:113 , TYR P:117 , TYR P:118 , LEU P:274 , ARG P:358 , TRP P:368 , PHE P:374
BINDING SITE FOR RESIDUE LOP P 504
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 24)
Info
All PROSITE Patterns/Profiles
1: CYTB_NTER (A:15-225,D:15-225,G:15-225,J:15-22...)
2: CYTC (B:23-142,E:23-142,H:23-142,K:23-14...)
3: RIESKE (C:117-185,F:117-185,I:117-185,L:11...)
4: CYTB_CTER (A:234-422,D:234-422,G:234-422,J:23...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTB_NTER
PS51002
Cytochrome b/b6 N-terminal region profile.
CYB_RHOSH
15-225
6
A:15-225
D:15-225
G:15-225
J:15-225
M:15-225
P:15-225
2
CYTC
PS51007
Cytochrome c family profile.
CY1_RHOSH
45-164
6
B:23-142
E:23-142
H:23-142
K:23-142
N:23-142
Q:23-142
3
RIESKE
PS51296
Rieske [2Fe-2S] iron-sulfur domain profile.
UCRI_RHOSH
117-185
6
C:117-185
F:117-185
I:117-185
L:117-185
O:117-185
R:117-185
4
CYTB_CTER
PS51003
Cytochrome b/b6 C-terminal region profile.
CYB_RHOSH
234-422
6
A:234-422
D:234-422
G:234-422
J:234-422
M:234-422
P:234-422
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(5, 30)
Info
all CATH domains
1a: CATH_2fynB01 (B:1-221)
1b: CATH_2fynE01 (E:1-221)
1c: CATH_2fynH01 (H:1-221)
1d: CATH_2fynK01 (K:1-221)
1e: CATH_2fynN01 (N:1-221)
1f: CATH_2fynQ01 (Q:1-221)
2a: CATH_2fynA00 (A:3-430)
2b: CATH_2fynD00 (D:3-430)
2c: CATH_2fynG00 (G:3-430)
2d: CATH_2fynJ00 (J:3-430)
2e: CATH_2fynM00 (M:3-430)
2f: CATH_2fynP00 (P:3-430)
3a: CATH_2fynB02 (B:222-256)
3b: CATH_2fynN02 (N:222-256)
3c: CATH_2fynQ02 (Q:222-256)
3d: CATH_2fynE02 (E:222-256)
3e: CATH_2fynH02 (H:222-256)
3f: CATH_2fynK02 (K:222-256)
4a: CATH_2fynC01 (C:9-41)
4b: CATH_2fynF01 (F:9-41)
4c: CATH_2fynI01 (I:9-41)
4d: CATH_2fynL01 (L:9-41)
4e: CATH_2fynO01 (O:9-41)
4f: CATH_2fynR01 (R:9-41)
5a: CATH_2fynC02 (C:42-187)
5b: CATH_2fynF02 (F:42-187)
5c: CATH_2fynI02 (I:42-187)
5d: CATH_2fynL02 (L:42-187)
5e: CATH_2fynO02 (O:42-187)
5f: CATH_2fynR02 (R:42-187)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
1a
2fynB01
B:1-221
1b
2fynE01
E:1-221
1c
2fynH01
H:1-221
1d
2fynK01
K:1-221
1e
2fynN01
N:1-221
1f
2fynQ01
Q:1-221
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome Bc1 Complex; Chain C
(51)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain C
(51)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
2a
2fynA00
A:3-430
2b
2fynD00
D:3-430
2c
2fynG00
G:3-430
2d
2fynJ00
J:3-430
2e
2fynM00
M:3-430
2f
2fynP00
P:3-430
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.100, no name defined]
(56)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
3a
2fynB02
B:222-256
3b
2fynN02
N:222-256
3c
2fynQ02
Q:222-256
3d
2fynE02
E:222-256
3e
2fynH02
H:222-256
3f
2fynK02
K:222-256
Homologous Superfamily
:
Single helix bin
(16)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
4a
2fynC01
C:9-41
4b
2fynF01
F:9-41
4c
2fynI01
I:9-41
4d
2fynL01
L:9-41
4e
2fynO01
O:9-41
4f
2fynR01
R:9-41
Class
:
Mainly Beta
(13760)
Architecture
:
3-layer Sandwich
(102)
Topology
:
Rieske Iron-sulfur Protein
(99)
Homologous Superfamily
:
'Rieske'-like iron-sulphur domains
(99)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(10)
5a
2fynC02
C:42-187
5b
2fynF02
F:42-187
5c
2fynI02
I:42-187
5d
2fynL02
L:42-187
5e
2fynO02
O:42-187
5f
2fynR02
R:42-187
[
close CATH info
]
Pfam Domains
(0, 0)
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Chain D
Chain E
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Chain M
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Asymmetric Unit 1
Rendering
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Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (867 KB)
Header - Asym.Unit
Biol.Unit 1 (290 KB)
Header - Biol.Unit 1
Biol.Unit 2 (290 KB)
Header - Biol.Unit 2
Biol.Unit 3 (290 KB)
Header - Biol.Unit 3
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