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2FYF
Asym. Unit
Info
Asym.Unit (143 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
STRUCTURE OF A PUTATIVE PHOSPHOSERINE AMINOTRANSFERASE FROM MYCOBACTERIUM TUBERCULOSIS
Authors
:
F. Coulibaly, E. Lassalle, E. N. Baker, Mycobacterium Tuberculosis Structural Proteomics Project (Xmtb)
Date
:
07 Feb 06 (Deposition) - 16 Jan 07 (Release) - 13 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Plp-Dependent Enzyme, Dimer, Structural Genomics, Mycobacterium Tuberculosis Structural Proteomics Project, Xmtb, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Coulibaly, E. Lassalle, H. M. Baker, E. N. Baker
Structure Of Phosphoserine Aminotransferase From Mycobacterium Tuberculosis.
Acta Crystallogr. , Sect. D V. 68 553 2012
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: TETRACHLOROPLATINATE(II) (PC4a)
2b: TETRACHLOROPLATINATE(II) (PC4b)
2c: TETRACHLOROPLATINATE(II) (PC4c)
2d: TETRACHLOROPLATINATE(II) (PC4d)
2e: TETRACHLOROPLATINATE(II) (PC4e)
2f: TETRACHLOROPLATINATE(II) (PC4f)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
PC4
6
Ligand/Ion
TETRACHLOROPLATINATE(II)
3
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
4
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:341 , ARG A:342 , HIS B:49 , ARG B:50 , HOH B:2548 , HOH B:2597
BINDING SITE FOR RESIDUE SO4 B 1387
02
AC2
SOFTWARE
HIS A:49 , ARG A:50 , HOH A:2540 , HOH A:2784 , TYR B:341 , ARG B:342
BINDING SITE FOR RESIDUE SO4 A 2392
03
AC3
SOFTWARE
GLU A:263 , TRP A:267 , HOH A:2827 , HOH A:2828 , HOH A:2829 , HOH A:2830
BINDING SITE FOR RESIDUE PC4 A 1382
04
AC4
SOFTWARE
GLU B:32 , HOH B:2801 , HOH B:2802 , HOH B:2803 , HOH B:2804
BINDING SITE FOR RESIDUE PC4 B 2386
05
AC5
SOFTWARE
GLU B:107 , HOH B:2659 , HOH B:2680
BINDING SITE FOR RESIDUE PC4 B 2391
06
AC6
SOFTWARE
ALA A:84 , THR A:85 , TRP A:88 , PHE A:108 , ASN A:152 , THR A:154 , ASP A:176 , THR A:178 , ALA A:197 , GLN A:199 , LYS A:200 , HOH A:2406 , HOH A:2662 , ASN B:251 , THR B:252 , HOH B:2452 , HOH B:2548
BINDING SITE FOR RESIDUE PLP A 1377
07
AC7
SOFTWARE
HIS A:8 , LEU A:9
BINDING SITE FOR RESIDUE PC4 A 1378
08
AC8
SOFTWARE
ASN A:251 , THR A:252 , HOH A:2540 , ALA B:84 , THR B:85 , TRP B:88 , PHE B:108 , ASN B:152 , THR B:154 , ASP B:176 , THR B:178 , ALA B:197 , GLN B:199 , LYS B:200 , HOH B:2397 , HOH B:2448 , HOH B:2749
BINDING SITE FOR RESIDUE PLP B 2377
09
AC9
SOFTWARE
ARG B:30 , GLN B:33 , GLU B:263 , ASP B:266 , TRP B:267 , HOH B:2775
BINDING SITE FOR RESIDUE PC4 B 2378
10
BC1
SOFTWARE
HIS B:8 , LEU B:9
BINDING SITE FOR RESIDUE PC4 B 2383
11
BC2
SOFTWARE
ARG A:62 , SER A:63 , ALA A:66 , GLU A:76 , VAL A:77 , HOH A:2641 , HOH A:2659 , HOH A:2748 , HOH A:2806
BINDING SITE FOR RESIDUE GOL A 1388
12
BC3
SOFTWARE
ARG A:375
BINDING SITE FOR RESIDUE GOL A 1389
13
BC4
SOFTWARE
ARG A:331 , HOH A:2684 , HOH A:2824 , ALA B:52
BINDING SITE FOR RESIDUE GOL A 1390
14
BC5
SOFTWARE
ARG B:62 , SER B:63 , GLU B:76 , VAL B:77 , HOH B:2603 , HOH B:2768
BINDING SITE FOR RESIDUE GOL B 2393
15
BC6
SOFTWARE
ALA A:52 , PRO A:53 , HOH A:2477 , ARG B:331 , HOH B:2552 , HOH B:2780
BINDING SITE FOR RESIDUE GOL B 2394
16
BC7
SOFTWARE
ARG B:375
BINDING SITE FOR RESIDUE GOL B 2395
17
BC8
SOFTWARE
LYS B:16 , PRO B:17 , GLY B:20 , ASN B:333 , GLY B:334
BINDING SITE FOR RESIDUE GOL B 2396
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2fyfa_ (A:)
1b: SCOP_d2fyfb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
automated matches
(163)
Protein domain
:
automated matches
(163)
Mycobacterium tuberculosis [TaxId: 83332]
(3)
1a
d2fyfa_
A:
1b
d2fyfb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (143 KB)
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Biol.Unit 1 (135 KB)
Header - Biol.Unit 1
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