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2FY7
Asym. Unit
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Asym.Unit (56 KB)
Biol.Unit 1 (51 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE HUMAN BETA1,4-GALACTOSYLTRANSFERASE MUTANT M339H IN APO FORM
Authors
:
B. Ramakrishnan, V. Ramasamy, P. K. Qasba
Date
:
07 Feb 06 (Deposition) - 14 Mar 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
M339H Mutant, Apo Enzyme, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Ramakrishnan, V. Ramasamy, P. K. Qasba
Structural Snapshots Of Beta-1, 4-Galactosyltransferase-I Along The Kinetic Pathway.
J. Mol. Biol. V. 357 1619 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: TRIETHYLENE GLYCOL (PGEa)
1b: TRIETHYLENE GLYCOL (PGEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:175 , HIS A:176 , CYS A:262 , PHE A:263 , SER A:264 , HOH A:562 , HOH A:638 , HOH A:731
BINDING SITE FOR RESIDUE PGE A 403
2
AC2
SOFTWARE
LEU A:136 , ASN A:158 , GLN A:203 , HOH A:701 , HOH A:780
BINDING SITE FOR RESIDUE PGE A 404
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_054020 (H257R, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_054020
H
257
R
B4GT1_HUMAN
Polymorphism
9169
A
H
257
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
Sorry, no Info available
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Exons
(6, 6)
Info
All Exons
Exon 1.1 (A:122-138 (gaps))
Exon 1.2 (A:138-216)
Exon 1.3 (A:217-279)
Exon 1.4 (A:279-320)
Exon 1.5 (A:320-355 (gaps))
Exon 1.6 (A:355-398)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000379731
1
ENSE00001482335
chr9:
33167354-33166756
599
B4GT1_HUMAN
1-138
138
1
A:122-138 (gaps)
31
1.2
ENST00000379731
2
ENSE00000695817
chr9:
33135422-33135187
236
B4GT1_HUMAN
138-216
79
1
A:138-216
79
1.3
ENST00000379731
3
ENSE00000695815
chr9:
33120604-33120417
188
B4GT1_HUMAN
217-279
63
1
A:217-279
63
1.4
ENST00000379731
4
ENSE00000695812
chr9:
33116111-33115989
123
B4GT1_HUMAN
279-320
42
1
A:279-320
42
1.5
ENST00000379731
5
ENSE00000695809
chr9:
33113876-33113772
105
B4GT1_HUMAN
320-355
36
1
A:320-355 (gaps)
36
1.6
ENST00000379731
6
ENSE00001482317
chr9:
33113584-33110635
2950
B4GT1_HUMAN
355-398
44
1
A:355-398
44
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2fy7a_ (A:)
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(
)
(
)
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)
(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
beta 1,4 galactosyltransferase (b4GalT1)
(39)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d2fy7a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2fy7A00 (A:122-398)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Human (Homo sapiens)
(73)
1a
2fy7A00
A:122-398
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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