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2FY2
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (105 KB)
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(1)
Title
:
STRUCTURES OF LIGAND BOUND HUMAN CHOLINE ACETYLTRANSFERASE PROVIDE INSIGHT INTO REGULATION OF ACETYLCHOLINE SYNTHESIS
Authors
:
A. R. Kim, R. J. Rylett, B. H. Shilton
Date
:
07 Feb 06 (Deposition) - 12 Dec 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Two Domain, Alpha-Beta Protein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. R. Kim, R. J. Rylett, B. H. Shilton
Substrate Binding And Catalytic Mechanism Of Human Choline Acetyltransferase.
Biochemistry V. 45 14621 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(16, 16)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_011666 (L92P, chain A, )
02: VAR_011667 (P93A, chain A, )
03: VAR_046684 (R104P, chain A, )
04: VAR_046685 (L125F, chain A, )
05: VAR_046686 (P181L, chain A, )
06: VAR_011668 (I187T, chain A, )
07: VAR_038605 (I218T, chain A, )
08: VAR_011676 (A274G, chain A, )
09: VAR_046687 (D282N, chain A, )
10: VAR_011669 (R302C, chain A, )
11: VAR_011670 (E323K, chain A, )
12: VAR_046688 (M343M, chain A, )
13: VAR_011671 (R364G, chain A, )
14: VAR_011672 (S380L, chain A, )
15: VAR_011673 (V388L, chain A, )
16: VAR_011674 (R442H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_011666
L
210
P
CLAT_HUMAN
Disease (CMS6)
28930071
A
L
92
P
02
UniProt
VAR_011667
P
211
A
CLAT_HUMAN
Disease (CMS6)
---
A
P
93
A
03
UniProt
VAR_046684
R
222
P
CLAT_HUMAN
Polymorphism
8178989
A
R
104
P
04
UniProt
VAR_046685
L
243
F
CLAT_HUMAN
Polymorphism
8178990
A
L
125
F
05
UniProt
VAR_046686
P
299
L
CLAT_HUMAN
Polymorphism
868749
A
P
181
L
06
UniProt
VAR_011668
I
305
T
CLAT_HUMAN
Disease (CMS6)
28929482
A
I
187
T
07
UniProt
VAR_038605
I
336
T
CLAT_HUMAN
Disease (CMS6)
---
A
I
218
T
08
UniProt
VAR_011676
A
392
G
CLAT_HUMAN
Polymorphism
---
A
A
274
G
09
UniProt
VAR_046687
D
400
N
CLAT_HUMAN
Polymorphism
8178991
A
D
282
N
10
UniProt
VAR_011669
R
420
C
CLAT_HUMAN
Disease (CMS6)
---
A
R
302
C
11
UniProt
VAR_011670
E
441
K
CLAT_HUMAN
Disease (CMS6)
28930070
A
E
323
K
12
UniProt
VAR_046688
V
461
M
CLAT_HUMAN
Polymorphism
4838544
A
M
343
M
13
UniProt
VAR_011671
R
482
G
CLAT_HUMAN
Disease (CMS6)
28929481
A
R
364
G
14
UniProt
VAR_011672
S
498
L
CLAT_HUMAN
Disease (CMS6)
---
A
S
380
L
15
UniProt
VAR_011673
V
506
L
CLAT_HUMAN
Disease (CMS6)
---
A
V
388
L
16
UniProt
VAR_011674
R
560
H
CLAT_HUMAN
Disease (CMS6)
---
A
R
442
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ACYLTRANSF_C_1 (A:13-28)
2: ACYLTRANSF_C_2 (A:302-329)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACYLTRANSF_C_1
PS00439
Acyltransferases ChoActase / COT / CPT family signature 1.
CLAT_HUMAN
131-146
1
A:13-28
2
ACYLTRANSF_C_2
PS00440
Acyltransferases ChoActase / COT / CPT family signature 2.
CLAT_HUMAN
420-447
1
A:302-329
[
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]
Exons
(14, 14)
Info
All Exons
Exon 1.5 (A:8-11)
Exon 1.6c (A:12-75)
Exon 1.7 (A:76-115)
Exon 1.8 (A:115-133)
Exon 1.9b (A:133-193 (gaps))
Exon 1.10 (A:194-253)
Exon 1.11 (A:253-309)
Exon 1.12 (A:310-343)
Exon 1.13 (A:343-386 (gaps))
Exon 1.14 (A:386-427)
Exon 1.15 (A:427-474)
Exon 1.16 (A:475-495)
Exon 1.17 (A:496-541)
Exon 1.18 (A:542-607)
View:
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All Exon Boundaries
01: Boundary 1.3a/1.5
02: Boundary 1.5/1.6c
03: Boundary 1.6c/1.7
04: Boundary 1.7/1.8
05: Boundary 1.8/1.9b
06: Boundary 1.9b/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/1.14
11: Boundary 1.14/1.15
12: Boundary 1.15/1.16
13: Boundary 1.16/1.17
14: Boundary 1.17/1.18
15: Boundary 1.18/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000337653
3a
ENSE00002152214
chr10:
50822083-50822521
439
CLAT_HUMAN
1-96
96
0
-
-
1.5
ENST00000337653
5
ENSE00001630343
chr10:
50824548-50824648
101
CLAT_HUMAN
96-129
34
1
A:8-11
4
1.6c
ENST00000337653
6c
ENSE00000703071
chr10:
50827771-50827962
192
CLAT_HUMAN
130-193
64
1
A:12-75
64
1.7
ENST00000337653
7
ENSE00000703068
chr10:
50828541-50828659
119
CLAT_HUMAN
194-233
40
1
A:76-115
40
1.8
ENST00000337653
8
ENSE00000582112
chr10:
50830143-50830196
54
CLAT_HUMAN
233-251
19
1
A:115-133
19
1.9b
ENST00000337653
9b
ENSE00000703064
chr10:
50833519-50833699
181
CLAT_HUMAN
251-311
61
1
A:133-193 (gaps)
61
1.10
ENST00000337653
10
ENSE00000582114
chr10:
50835654-50835831
178
CLAT_HUMAN
312-371
60
1
A:194-253
60
1.11
ENST00000337653
11
ENSE00000986061
chr10:
50854551-50854720
170
CLAT_HUMAN
371-427
57
1
A:253-309
57
1.12
ENST00000337653
12
ENSE00000986062
chr10:
50856553-50856653
101
CLAT_HUMAN
428-461
34
1
A:310-343
34
1.13
ENST00000337653
13
ENSE00000986063
chr10:
50857554-50857682
129
CLAT_HUMAN
461-504
44
1
A:343-386 (gaps)
44
1.14
ENST00000337653
14
ENSE00000335649
chr10:
50859930-50860052
123
CLAT_HUMAN
504-545
42
1
A:386-427
42
1.15
ENST00000337653
15
ENSE00000703047
chr10:
50863141-50863282
142
CLAT_HUMAN
545-592
48
1
A:427-474
48
1.16
ENST00000337653
16
ENSE00000335651
chr10:
50863432-50863494
63
CLAT_HUMAN
593-613
21
1
A:475-495
21
1.17
ENST00000337653
17
ENSE00000986064
chr10:
50870691-50870828
138
CLAT_HUMAN
614-659
46
1
A:496-541
46
1.18
ENST00000337653
18
ENSE00001373391
chr10:
50872823-50873150
328
CLAT_HUMAN
660-748
89
1
A:542-607
66
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2fy2a1 (A:8-391)
1b: SCOP_d2fy2a2 (A:392-607)
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
CoA-dependent acyltransferases
(53)
Superfamily
:
CoA-dependent acyltransferases
(53)
Family
:
Choline/Carnitine O-acyltransferase
(21)
Protein domain
:
Choline O-acetyltransferase
(6)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2fy2a1
A:8-391
1b
d2fy2a2
A:392-607
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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