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2FX8
Asym. Unit
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Asym.Unit (296 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (78 KB)
Biol.Unit 4 (78 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-1 NEUTRALIZING HUMAN FAB 4E10 IN COMPLEX WITH AN AIB-INDUCED PEPTIDE ENCOMPASSING THE 4E10 EPITOPE ON GP41
Authors
:
R. M. F. Cardoso, F. M. Brunel, S. Ferguson, D. R. Burton, P. E. Dawson, I.
Date
:
03 Feb 06 (Deposition) - 19 Dec 06 (Release) - 22 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : H,I,J,K,L,M,N,O,P,Q,R,S
Biol. Unit 1: H,L,P (1x)
Biol. Unit 2: I,M,Q (1x)
Biol. Unit 3: J,N,R (1x)
Biol. Unit 4: K,O,S (1x)
Keywords
:
Immunoglobulin Fold, Beta-Sandwich, Antibody-Epitope Complex, Immune System
(Keyword Search:
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]
)
Reference
:
R. M. Cardoso, F. M. Brunel, S. Ferguson, M. Zwick, D. R. Burton, P. E. Dawson, I. A. Wilson
Structural Basis Of Enhanced Binding Of Extended And Helically Constrained Peptide Epitopes Of The Broadly Neutralizing Hiv-1 Antibody 4E10.
J. Mol. Biol. V. 365 1533 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ALPHA-AMINOISOBUTYRIC ACID (AIBa)
1b: ALPHA-AMINOISOBUTYRIC ACID (AIBb)
1c: ALPHA-AMINOISOBUTYRIC ACID (AIBc)
1d: ALPHA-AMINOISOBUTYRIC ACID (AIBd)
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No.
Name
Count
Type
Full Name
1
AIB
4
Mod. Amino Acid
ALPHA-AMINOISOBUTYRIC ACID
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 16)
Info
All SCOP Domains
1a: SCOP_d2fx8h2 (H:114-227)
1b: SCOP_d2fx8i2 (I:114-227)
1c: SCOP_d2fx8j2 (J:114-227)
1d: SCOP_d2fx8k2 (K:114-227)
2a: SCOP_d2fx8l2 (L:108-213)
2b: SCOP_d2fx8m2 (M:108-213)
2c: SCOP_d2fx8n2 (N:108-213)
2d: SCOP_d2fx8o2 (O:108-213)
3a: SCOP_d2fx8h1 (H:1-113)
3b: SCOP_d2fx8i1 (I:1-113)
3c: SCOP_d2fx8j1 (J:1-113)
3d: SCOP_d2fx8k1 (K:1-113)
4a: SCOP_d2fx8l1 (L:1-107)
4b: SCOP_d2fx8m1 (M:1-107)
4c: SCOP_d2fx8n1 (N:1-107)
4d: SCOP_d2fx8o1 (O:1-107)
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)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
1a
d2fx8h2
H:114-227
1b
d2fx8i2
I:114-227
1c
d2fx8j2
J:114-227
1d
d2fx8k2
K:114-227
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
2a
d2fx8l2
L:108-213
2b
d2fx8m2
M:108-213
2c
d2fx8n2
N:108-213
2d
d2fx8o2
O:108-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Human (Homo sapiens), cluster 1 [TaxId: 9606]
(37)
3a
d2fx8h1
H:1-113
3b
d2fx8i1
I:1-113
3c
d2fx8j1
J:1-113
3d
d2fx8k1
K:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
(31)
4a
d2fx8l1
L:1-107
4b
d2fx8m1
M:1-107
4c
d2fx8n1
N:1-107
4d
d2fx8o1
O:1-107
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CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_2fx8L02 (L:109-211)
1b: CATH_2fx8L01 (L:1-108)
1c: CATH_2fx8M01 (M:1-108)
1d: CATH_2fx8N01 (N:1-108)
1e: CATH_2fx8O01 (O:1-108)
1f: CATH_2fx8H02 (H:110-227)
1g: CATH_2fx8I02 (I:110-227)
1h: CATH_2fx8J02 (J:110-227)
1i: CATH_2fx8K02 (K:110-227)
1j: CATH_2fx8H01 (H:1-109)
1k: CATH_2fx8I01 (I:1-109)
1l: CATH_2fx8J01 (J:1-109)
1m: CATH_2fx8K01 (K:1-109)
1n: CATH_2fx8M02 (M:109-211)
1o: CATH_2fx8N02 (N:109-211)
1p: CATH_2fx8O02 (O:109-211)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
2fx8L02
L:109-211
1b
2fx8L01
L:1-108
1c
2fx8M01
M:1-108
1d
2fx8N01
N:1-108
1e
2fx8O01
O:1-108
1f
2fx8H02
H:110-227
1g
2fx8I02
I:110-227
1h
2fx8J02
J:110-227
1i
2fx8K02
K:110-227
1j
2fx8H01
H:1-109
1k
2fx8I01
I:1-109
1l
2fx8J01
J:1-109
1m
2fx8K01
K:1-109
1n
2fx8M02
M:109-211
1o
2fx8N02
N:109-211
1p
2fx8O02
O:109-211
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Pfam Domains
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Show PDB file:
Asym.Unit (296 KB)
Header - Asym.Unit
Biol.Unit 1 (78 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
Biol.Unit 3 (78 KB)
Header - Biol.Unit 3
Biol.Unit 4 (78 KB)
Header - Biol.Unit 4
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