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2FX4
Asym. Unit
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Asym.Unit (43 KB)
Biol.Unit 1 (39 KB)
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(1)
Title
:
BOVINE TRYPSIN BOUND BY 4-PIPERIDINEBUTYRATE TO MAKE ACYLENZYME COMPLEX
Authors
:
B. A. Katz
Date
:
03 Feb 06 (Deposition) - 14 Feb 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Serine Protease, Acylenzyme Complex, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. E. Mcgrath, P. A. Sprengeler, B. Hirschbein, J. R. Somoza, I. Lehoux, J. W. Janc, E. Gjerstad, M. Graupe, A. Estiarte, C. Venkataramani, Y. Liu, R. Yee, J. D. Ho, M. J. Green, C. -S. Lee, L. Liu, V. Tai, J. Spencer, D. Sperandio, B. A. Katz
Structure-Guided Design Of Peptide-Based Tryptase Inhibitors.
Biochemistry V. 45 5964 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 4-PIPERIDINEBUTYRATE (C1Ra)
2a: CALCIUM ION (CAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
C1R
1
Ligand/Ion
4-PIPERIDINEBUTYRATE
2
CA
1
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:70 , ASN A:72 , VAL A:75 , GLU A:80 , HOH A:248 , HOH A:560
BINDING SITE FOR RESIDUE CA A 247
2
AC2
SOFTWARE
ASP A:189 , SER A:190 , CYS A:191 , GLN A:192 , GLY A:193 , ASP A:194 , SER A:195 , VAL A:213 , TRP A:215 , GLY A:219 , GLY A:226
BINDING SITE FOR RESIDUE C1R A 246
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:16-243)
2: TRYPSIN_HIS (A:53-58)
3: TRYPSIN_SER (A:189-200)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
TRY1_BOVIN
24-244
1
A:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
TRY1_BOVIN
59-64
1
A:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
TRY1_BOVIN
194-205
1
A:189-200
[
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Exons
(4, 4)
Info
All Exons
Exon 1.2 (A:16-63 (gaps))
Exon 1.3 (A:63-151 (gaps))
Exon 1.4 (A:151-194)
Exon 1.5 (A:195-245 (gaps))
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000033479
1
ENSBTAE00000401279
chr4:
109299627-109299547
81
TRY1_BOVIN
1-16
16
0
-
-
1.2
ENSBTAT00000033479
2
ENSBTAE00000397626
chr4:
109298170-109298011
160
TRY1_BOVIN
16-69
54
1
A:16-63 (gaps)
48
1.3
ENSBTAT00000033479
3
ENSBTAE00000409037
chr4:
109297593-109297340
254
TRY1_BOVIN
69-154
86
1
A:63-151 (gaps)
90
1.4
ENSBTAT00000033479
4
ENSBTAE00000386782
chr4:
109296654-109296518
137
TRY1_BOVIN
154-199
46
1
A:151-194
46
1.5
ENSBTAT00000033479
5
ENSBTAE00000422174
chr4:
109295990-109295749
242
TRY1_BOVIN
200-248
49
1
A:195-245 (gaps)
52
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2fx4a_ (A:)
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Classes
(
)
(
)
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)
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Trypsin(ogen)
(500)
Cow (Bos taurus) [TaxId: 9913]
(392)
1a
d2fx4a_
A:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2fx4A01 (A:16-27,A:121-232)
1b: CATH_2fx4A02 (A:28-120,A:233-244)
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)
(
)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Cattle (Bos taurus)
(308)
1a
2fx4A01
A:16-27,A:121-232
1b
2fx4A02
A:28-120,A:233-244
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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