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Asym. Unit
Info
Asym.Unit (302 KB)
Biol.Unit 1 (100 KB)
Biol.Unit 2 (101 KB)
Biol.Unit 3 (101 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BIGLYCAN DIMER CORE PROTEIN
Authors
:
P. G. Scott, C. M. Dodd, E. M. Bergmann
Date
:
23 Jan 06 (Deposition) - 28 Mar 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Proteoglycan, Dimer Interface, Structural Protein, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. G. Scott, C. M. Dodd, E. M. Bergmann, J. K. Sheehan, P. N. Bishop
Crystal Structure Of The Biglycan Dimer And Evidence That Dimerization Is Essential For Folding And Stability Of Clas I Small Leucine-Rich Repeat Proteoglycans.
J. Biol. Chem. V. 281 13324 2006
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
1c: CITRATE ANION (FLCc)
1d: CITRATE ANION (FLCd)
1e: CITRATE ANION (FLCe)
1f: CITRATE ANION (FLCf)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
6
Ligand/Ion
CITRATE ANION
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:252 , ASN A:275
BINDING SITE FOR RESIDUE NAG A 801
02
AC2
SOFTWARE
LYS B:252 , ASN B:275
BINDING SITE FOR RESIDUE NAG B 803
03
AC3
SOFTWARE
SER C:254 , ASN C:275
BINDING SITE FOR RESIDUE NAG C 805
04
AC4
SOFTWARE
ASN D:275
BINDING SITE FOR RESIDUE NAG D 807
05
AC5
SOFTWARE
ASN E:275
BINDING SITE FOR RESIDUE NAG E 809
06
AC6
SOFTWARE
ASN F:275
BINDING SITE FOR RESIDUE NAG F 811
07
AC7
SOFTWARE
GLY A:225 , HIS A:226 , HIS A:247 , ASP A:249
BINDING SITE FOR RESIDUE FLC A 2190
08
AC8
SOFTWARE
HIS B:202 , GLY B:225 , HIS B:226 , HIS B:247 , ASP B:249
BINDING SITE FOR RESIDUE FLC B 2191
09
AC9
SOFTWARE
GLY C:225 , HIS C:226 , HIS C:247 , ASP C:249 , LEU D:43 , GLY D:44
BINDING SITE FOR RESIDUE FLC C 2192
10
BC1
SOFTWARE
HIS D:202 , GLY D:225 , HIS D:226 , HIS D:247 , ASP D:249
BINDING SITE FOR RESIDUE FLC D 2193
11
BC2
SOFTWARE
HIS E:226 , HIS E:247 , ASP E:249 , LEU F:43 , GLY F:44
BINDING SITE FOR RESIDUE FLC E 2194
12
BC3
SOFTWARE
HIS F:226 , HIS F:247 , ASP F:249 , TYR F:270
BINDING SITE FOR RESIDUE FLC F 2195
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 48)
Info
All PROSITE Patterns/Profiles
1: LRR (A:55-76,B:55-76,C:55-76,D:55-76,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
PGS1_BOVIN
92-113
116-137
140-161
162-182
231-252
255-278
279-301
302-323
48
A:55-76
B:55-76
C:55-76
D:55-76
E:55-76
F:55-76
A:79-100
B:79-100
C:79-100
D:79-100
E:79-100
F:79-100
A:103-124
B:103-124
C:103-124
D:103-124
E:103-124
F:103-124
A:125-145
B:125-145
C:125-145
D:125-145
E:125-145
F:125-145
A:194-215
B:194-215
C:194-215
D:194-215
E:194-215
F:194-215
A:218-241
B:218-241
C:218-241
D:218-241
E:218-241
F:218-241
A:242-264
B:242-264
C:242-264
D:242-264
E:242-264
F:242-264
A:265-286
B:265-286
C:265-286
D:265-286
E:265-286
F:265-286
[
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]
Exons
(9, 54)
Info
All Exons
Exon 1.2 (A:25-44 | B:25-44 | C:25-44 | D:25...)
Exon 1.3 (A:44-81 | B:44-81 | C:44-81 | D:44...)
Exon 1.4 (A:82-153 | B:82-153 | C:82-153 | D...)
Exon 1.5 (A:153-190 | B:153-190 | C:153-190 ...)
Exon 1.6 (A:190-221 | B:190-221 | C:190-221 ...)
Exon 1.7 (A:221-267 | B:221-267 | C:221-267 ...)
Exon 1.8 (A:268-269 | B:268-269 | C:268-269 ...)
Exon 1.9 (A:270-277 | B:270-277 | C:270-277 ...)
Exon 1.10b (A:278-327 | B:278-327 | C:278-327 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1b/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10b
10: Boundary 1.10b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENSBTAT00000047242
1b
ENSBTAE00000418261
X:23017011-23017096
86
PGS1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000047242
2
ENSBTAE00000055440
X:23025456-23025707
252
PGS1_BOVIN
1-81
81
6
A:25-44
B:25-44
C:25-44
D:25-44
E:25-44
F:25-44
20
20
20
20
20
20
1.3
ENSBTAT00000047242
3
ENSBTAE00000055441
X:23025978-23026090
113
PGS1_BOVIN
81-118
38
6
A:44-81
B:44-81
C:44-81
D:44-81
E:44-81
F:44-81
38
38
38
38
38
38
1.4
ENSBTAT00000047242
4
ENSBTAE00000055442
X:23026862-23027075
214
PGS1_BOVIN
119-190
72
6
A:82-153
B:82-153
C:82-153
D:82-153
E:82-153
F:82-153
72
72
72
72
72
72
1.5
ENSBTAT00000047242
5
ENSBTAE00000055443
X:23027576-23027686
111
PGS1_BOVIN
190-227
38
6
A:153-190
B:153-190
C:153-190
D:153-190
E:153-190
F:153-190
38
38
38
38
38
38
1.6
ENSBTAT00000047242
6
ENSBTAE00000055444
X:23027942-23028035
94
PGS1_BOVIN
227-258
32
6
A:190-221
B:190-221
C:190-221
D:190-221
E:190-221
F:190-221
32
32
32
32
32
32
1.7
ENSBTAT00000047242
7
ENSBTAE00000055445
X:23028138-23028276
139
PGS1_BOVIN
258-304
47
6
A:221-267
B:221-267
C:221-267
D:221-267
E:221-267
F:221-267
47
47
47
47
47
47
1.8
ENSBTAT00000047242
8
ENSBTAE00000404395
X:23029665-23029670
6
PGS1_BOVIN
305-306
2
6
A:268-269
B:268-269
C:268-269
D:268-269
E:268-269
F:268-269
2
2
2
2
2
2
1.9
ENSBTAT00000047242
9
ENSBTAE00000351981
X:23029672-23029695
24
PGS1_BOVIN
307-314
8
6
A:270-277
B:270-277
C:270-277
D:270-277
E:270-277
F:270-277
8
8
8
8
8
8
1.10b
ENSBTAT00000047242
10b
ENSBTAE00000055447
X:23029697-23030795
1099
PGS1_BOVIN
315-369
55
6
A:278-327
B:278-327
C:278-327
D:278-328
E:278-327
F:278-329
50
50
50
51
50
52
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2ft3A00 (A:25-327)
1b: CATH_2ft3B00 (B:25-327)
1c: CATH_2ft3C00 (C:25-327)
1d: CATH_2ft3E00 (E:25-327)
1e: CATH_2ft3D00 (D:25-328)
1f: CATH_2ft3F00 (F:25-329)
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Classes
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)
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)
(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Cattle (Bos taurus)
(5)
1a
2ft3A00
A:25-327
1b
2ft3B00
B:25-327
1c
2ft3C00
C:25-327
1d
2ft3E00
E:25-327
1e
2ft3D00
D:25-328
1f
2ft3F00
F:25-329
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain F
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