PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2FSZ
Asym. Unit
Info
Asym.Unit (81 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (297 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
A SECOND BINDING SITE FOR HYDROXYTAMOXIFEN WITHIN THE COACTIVATOR-BINDING GROOVE OF ESTROGEN RECEPTOR BETA
Authors
:
Yong Wang
Date
:
23 Jan 06 (Deposition) - 11 Jul 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (4x)
Keywords
:
Nuclear Hormone Binding Domain, Hormone/Growth Factor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Wang, N. Y. Chirgadze, S. L. Briggs, S. Khan, E. V. Jensen, T. P. Burris
A Second Binding Site For Hydroxytamoxifen Within The Coactivator-Binding Groove Of Estrogen Receptor Beta
Proc. Natl. Acad. Sci. Usa V. 103 9908 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: 4-HYDROXYTAMOXIFEN (OHTa)
1b: 4-HYDROXYTAMOXIFEN (OHTb)
1c: 4-HYDROXYTAMOXIFEN (OHTc)
1d: 4-HYDROXYTAMOXIFEN (OHTd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
OHT
4
Ligand/Ion
4-HYDROXYTAMOXIFEN
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:295 , LEU A:298 , THR A:299 , ASP A:303 , GLU A:305 , MET A:336 , ARG A:346 , ILE A:373 , LEU A:380 , GLY A:472 , LEU A:476 , HOH B:27 , PRO B:486
BINDING SITE FOR RESIDUE OHT A 101
2
AC2
SOFTWARE
PRO A:486 , MET B:295 , LEU B:298 , ALA B:302 , ASP B:303 , GLU B:305 , LEU B:306 , MET B:336 , MET B:340 , ARG B:346 , ILE B:373 , LEU B:380 , GLY B:472 , LEU B:476
BINDING SITE FOR RESIDUE OHT B 102
3
AC3
SOFTWARE
LEU A:306 , ILE A:310 , LYS A:314 , GLN A:327 , VAL A:328 , LEU A:331 , GLU A:332 , TRP A:335 , OHT B:104 , LEU B:490 , MET B:494 , VAL B:499 , ARG B:501
BINDING SITE FOR RESIDUE OHT A 103
4
AC4
SOFTWARE
OHT A:103 , LEU A:490 , MET A:494 , ARG A:501 , HOH B:32 , LEU B:306 , ILE B:310 , LEU B:324 , GLN B:327 , VAL B:328 , LEU B:331 , GLU B:332 , TRP B:335
BINDING SITE FOR RESIDUE OHT B 104
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(5, 10)
Info
All Exons
Exon 1.6 (A:264-318 | B:260-318)
Exon 1.8 (A:318-364 | B:318-364)
Exon 1.9 (A:364-409 | B:364-409)
Exon 1.10 (A:409-469 (gaps) | B:409-469 (gaps...)
Exon 1.11b (A:469-501 (gaps) | B:469-501 (gaps...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11b
6: Boundary 1.11b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000341099
2b
ENSE00001848078
chr14:
64761078-64760751
328
ESR2_HUMAN
-
0
0
-
-
1.3
ENST00000341099
3
ENSE00001193559
chr14:
64749793-64749342
452
ESR2_HUMAN
1-121
121
0
-
-
1.4
ENST00000341099
4
ENSE00001170893
chr14:
64746871-64746699
173
ESR2_HUMAN
121-179
59
0
-
-
1.5
ENST00000341099
5
ENSE00001750014
chr14:
64735629-64735513
117
ESR2_HUMAN
179-218
40
0
-
-
1.6
ENST00000341099
6
ENSE00001170836
chr14:
64727466-64727167
300
ESR2_HUMAN
218-318
101
2
A:264-318
B:260-318
55
59
1.8
ENST00000341099
8
ENSE00001170869
chr14:
64724082-64723944
139
ESR2_HUMAN
318-364
47
2
A:318-364
B:318-364
47
47
1.9
ENST00000341099
9
ENSE00001193507
chr14:
64716397-64716264
134
ESR2_HUMAN
364-409
46
2
A:364-409
B:364-409
46
46
1.10
ENST00000341099
10
ENSE00001096736
chr14:
64701868-64701688
181
ESR2_HUMAN
409-469
61
2
A:409-469 (gaps)
B:409-469 (gaps)
61
61
1.11b
ENST00000341099
11b
ENSE00001564600
chr14:
64700041-64699806
236
ESR2_HUMAN
469-530
62
2
A:469-501 (gaps)
B:469-501 (gaps)
33
33
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2fsza_ (A:)
1b: SCOP_d2fszb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Estrogen receptor beta
(28)
Human (Homo sapiens) [TaxId: 9606]
(26)
1a
d2fsza_
A:
1b
d2fszb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2fszB00 (B:260-501)
1b: CATH_2fszA00 (A:264-501)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
2fszB00
B:260-501
1b
2fszA00
A:264-501
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (81 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (297 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2FSZ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
