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2FSA
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (36 KB)
Biol.Unit 2 (33 KB)
Biol.Unit 3 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHD FINGER-LINKER-BROMODOMAIN FRAGMENT OF HUMAN BPTF IN THE H3(1-15)K4ME2 BOUND STATE
Authors
:
H. Li, D. J. Patel
Date
:
21 Jan 06 (Deposition) - 11 Jul 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,P
Biol. Unit 1: A,P (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Phd Finger, Bromodomain, Peptide Complex, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Li, S. Ilin, W. Wang, E. M. Duncan, J. Wysocka, C. D. Allis, D. J. Patel
Molecular Basis For Site-Specific Read-Out Of Histone H3K4Me3 By The Bptf Phd Finger Of Nurf.
Nature V. 442 91 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: N-DIMETHYL-LYSINE (MLYa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MLY
1
Mod. Amino Acid
N-DIMETHYL-LYSINE
2
MSE
15
Mod. Amino Acid
SELENOMETHIONINE
3
ZN
6
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:11 , CYS A:13 , HIS A:34 , CYS A:37
BINDING SITE FOR RESIDUE ZN A 501
2
AC2
SOFTWARE
CYS A:26 , CYS A:29 , CYS A:53 , CYS A:56
BINDING SITE FOR RESIDUE ZN A 502
3
AC3
SOFTWARE
CYS B:11 , CYS B:13 , HIS B:34 , CYS B:37
BINDING SITE FOR RESIDUE ZN B 503
4
AC4
SOFTWARE
CYS B:26 , CYS B:29 , CYS B:53 , CYS B:56
BINDING SITE FOR RESIDUE ZN B 504
5
AC5
SOFTWARE
CYS C:11 , CYS C:13 , HIS C:34 , CYS C:37
BINDING SITE FOR RESIDUE ZN C 505
6
AC6
SOFTWARE
CYS C:26 , CYS C:29 , CYS C:53 , CYS C:56
BINDING SITE FOR RESIDUE ZN C 506
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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]
PROSITE Patterns/Profiles
(4, 12)
Info
All PROSITE Patterns/Profiles
1: ZF_PHD_2 (-|A:8-59,B:8-59,C:8-59)
2: ZF_PHD_1 (-|A:11-56,B:11-56,C:11-56)
3: BROMODOMAIN_2 (A:85-155,B:85-155,C:85-155)
4: BROMODOMAIN_1 (A:90-147,B:90-147,C:90-147)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_PHD_2
PS50016
Zinc finger PHD-type profile.
BPTF_HUMAN
390-437
2867-2918
3
-
A:8-59
B:8-59
C:8-59
2
ZF_PHD_1
PS01359
Zinc finger PHD-type signature.
BPTF_HUMAN
393-434
2870-2915
3
-
A:11-56
B:11-56
C:11-56
3
BROMODOMAIN_2
PS50014
Bromodomain profile.
BPTF_HUMAN
2944-3014
3
A:85-155
B:85-155
C:85-155
4
BROMODOMAIN_1
PS00633
Bromodomain signature.
BPTF_HUMAN
2949-3006
3
A:90-147
B:90-147
C:90-147
[
close PROSITE info
]
Exons
(4, 12)
Info
All Exons
Exon 1.27a (A:6-21 | B:7-21 | C:8-21)
Exon 1.29 (A:21-85 | B:21-85 | C:21-85)
Exon 1.30 (A:86-114 | B:86-114 | C:86-114)
Exon 1.31 (A:114-173 | B:114-173 | C:114-173)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.26/1.27a
2: Boundary 1.27a/1.29
3: Boundary 1.29/1.30
4: Boundary 1.30/1.31
5: Boundary 1.31/1.32c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000321892
1c
ENSE00001357454
chr17:
65821780-65822453
674
BPTF_HUMAN
1-205
205
0
-
-
1.2
ENST00000321892
2
ENSE00001148014
chr17:
65850056-65850878
823
BPTF_HUMAN
205-479
275
0
-
-
1.3
ENST00000321892
3
ENSE00001148007
chr17:
65862580-65862803
224
BPTF_HUMAN
479-554
76
0
-
-
1.4
ENST00000321892
4
ENSE00001147999
chr17:
65870933-65871136
204
BPTF_HUMAN
554-622
69
0
-
-
1.5
ENST00000321892
5
ENSE00001147993
chr17:
65871672-65871860
189
BPTF_HUMAN
622-685
64
0
-
-
1.7
ENST00000321892
7
ENSE00001147984
chr17:
65882244-65882432
189
BPTF_HUMAN
685-748
64
0
-
-
1.8
ENST00000321892
8
ENSE00001147980
chr17:
65887960-65888150
191
BPTF_HUMAN
748-811
64
0
-
-
1.9
ENST00000321892
9
ENSE00001223583
chr17:
65889486-65889841
356
BPTF_HUMAN
812-930
119
0
-
-
1.10
ENST00000321892
10
ENSE00001612408
chr17:
65890150-65890281
132
BPTF_HUMAN
930-974
45
0
-
-
1.11
ENST00000321892
11
ENSE00002166039
chr17:
65899905-65900034
130
BPTF_HUMAN
974-1017
44
0
-
-
1.12
ENST00000321892
12
ENSE00001750925
chr17:
65900818-65900956
139
BPTF_HUMAN
1018-1064
47
0
-
-
1.13
ENST00000321892
13
ENSE00001665602
chr17:
65905698-65905877
180
BPTF_HUMAN
1064-1124
61
0
-
-
1.14
ENST00000321892
14
ENSE00001606591
chr17:
65906993-65909303
2311
BPTF_HUMAN
1124-1894
771
0
-
-
1.15
ENST00000321892
15
ENSE00001657056
chr17:
65914830-65914954
125
BPTF_HUMAN
1894-1936
43
0
-
-
1.16
ENST00000321892
16
ENSE00001625445
chr17:
65916131-65916259
129
BPTF_HUMAN
1936-1979
44
0
-
-
1.17
ENST00000321892
17
ENSE00001642854
chr17:
65918956-65919106
151
BPTF_HUMAN
1979-2029
51
0
-
-
1.18
ENST00000321892
18
ENSE00001783568
chr17:
65920663-65920705
43
BPTF_HUMAN
2029-2043
15
0
-
-
1.19
ENST00000321892
19
ENSE00001604847
chr17:
65924471-65924717
247
BPTF_HUMAN
2044-2126
83
0
-
-
1.20
ENST00000321892
20
ENSE00001680408
chr17:
65925452-65925603
152
BPTF_HUMAN
2126-2176
51
0
-
-
1.21
ENST00000321892
21
ENSE00001779718
chr17:
65928027-65928135
109
BPTF_HUMAN
2177-2213
37
0
-
-
1.22
ENST00000321892
22
ENSE00001770472
chr17:
65936555-65936772
218
BPTF_HUMAN
2213-2285
73
0
-
-
1.23a
ENST00000321892
23a
ENSE00001733774
chr17:
65940266-65940488
223
BPTF_HUMAN
2286-2360
75
0
-
-
1.24c
ENST00000321892
24c
ENSE00001223457
chr17:
65941525-65942441
917
BPTF_HUMAN
2360-2665
306
0
-
-
1.25
ENST00000321892
25
ENSE00001603899
chr17:
65943842-65943924
83
BPTF_HUMAN
2666-2693
28
0
-
-
1.26
ENST00000321892
26
ENSE00001707553
chr17:
65944197-65944422
226
BPTF_HUMAN
2693-2768
76
0
-
-
1.27a
ENST00000321892
27a
ENSE00001743235
chr17:
65955657-65955991
335
BPTF_HUMAN
2769-2880
112
3
A:6-21
B:7-21
C:8-21
16
15
14
1.29
ENST00000321892
29
ENSE00001707648
chr17:
65960328-65960520
193
BPTF_HUMAN
2880-2944
65
3
A:21-85
B:21-85
C:21-85
65
65
65
1.30
ENST00000321892
30
ENSE00001598996
chr17:
65962688-65962772
85
BPTF_HUMAN
2945-2973
29
3
A:86-114
B:86-114
C:86-114
29
29
29
1.31
ENST00000321892
31
ENSE00001755666
chr17:
65971888-65972074
187
BPTF_HUMAN
2973-3035
63
3
A:114-173
B:114-173
C:114-173
60
60
60
1.32c
ENST00000321892
32c
ENSE00001766345
chr17:
65978368-65980494
2127
BPTF_HUMAN
3035-3046
12
0
-
-
[
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