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Asym. Unit
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Asym.Unit (60 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CELLULAR RETINOIC ACID BINDING PROTEIN TYPE II IN COMPLEX WITH ALL-TRANS-RETINOIC ACID AT 1.48 ANGSTROMS RESOLUTION
Authors
:
S. Vaezeslami, J. H. Geiger
Date
:
18 Jan 06 (Deposition) - 19 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Crabpii, Retinoic Acid, Retinoids, Beta Barrel, Crystallography, X-Ray, High Resolution, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Vaezeslami, E. Mathes, C. Vasileiou, B. Borhan, J. H. Geiger
The Structure Of Apo-Wild-Type Cellular Retinoic Acid Binding Protein Ii At 1. 4 A And Its Relationship To Ligand Binding And Nuclear Translocation.
J. Mol. Biol. V. 363 687 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: RETINOIC ACID (REAa)
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Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
REA
1
Ligand/Ion
RETINOIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:12 , GLU A:13 , ASN A:14 , PHE A:15 , GLU A:16 , HOH A:640 , HOH A:673
BINDING SITE FOR RESIDUE ACT A 500
2
AC2
SOFTWARE
ARG A:11 , GLU A:13 , LEU A:19 , ALA A:32 , THR A:54 , VAL A:58 , LEU A:121 , ARG A:132 , TYR A:134 , HOH A:611 , HOH A:634
BINDING SITE FOR RESIDUE REA A 300
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FABP (A:5-22)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FABP
PS00214
Cytosolic fatty-acid binding proteins signature.
RABP2_HUMAN
6-23
1
A:5-22
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Exons
(4, 4)
Info
All Exons
Exon 1.2a (A:1-23)
Exon 1.3b (A:23-82)
Exon 1.4 (A:83-121)
Exon 1.5b (A:122-137)
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All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.3b
3: Boundary 1.3b/1.4
4: Boundary 1.4/1.5b
5: Boundary 1.5b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000368222
2a
ENSE00001446616
chr1:
156675393-156675169
225
RABP2_HUMAN
1-24
24
1
A:1-23
23
1.3b
ENST00000368222
3b
ENSE00000959257
chr1:
156670844-156670666
179
RABP2_HUMAN
24-83
60
1
A:23-82
60
1.4
ENST00000368222
4
ENSE00000959258
chr1:
156670450-156670334
117
RABP2_HUMAN
84-122
39
1
A:83-121
39
1.5b
ENST00000368222
5b
ENSE00001446614
chr1:
156669868-156669398
471
RABP2_HUMAN
123-138
16
1
A:122-137
16
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2fr3a_ (A:)
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)
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)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Fatty acid binding protein-like
(183)
Protein domain
:
Cellular retinoic-acid-binding protein (CRABP)
(37)
Human (Homo sapiens), CRABP-II [TaxId: 9606]
(34)
1a
d2fr3a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2fr3A00 (A:1-137)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Human (Homo sapiens)
(91)
1a
2fr3A00
A:1-137
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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