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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
2FPY
Asym. Unit
Info
Asym.Unit (71 KB)
Biol.Unit 1 (66 KB)
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(1)
Title
:
DUAL BINDING MODE OF A NOVEL SERIES OF DHODH INHIBITORS
Authors
:
R. Baumgartner, J. Leban
Date
:
17 Jan 06 (Deposition) - 23 Jan 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein Inhibitor Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Baumgartner, M. Walloschek, M. Kralik, A. Gotschlich, S. Tasler, J. Mies, J. Leban
Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors.
J. Med. Chem. V. 49 1239 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 9)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: FLAVIN MONONUCLEOTIDE (FMNa)
3a: 3-({[3,5-DIFLUORO-3'-(TRIFLUOROMET... (ILFa)
4a: OROTIC ACID (OROa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
3
ILF
1
Ligand/Ion
3-({[3,5-DIFLUORO-3'-(TRIFLUOROMETHOXY)BIPHENYL-4-YL]AMINO}CARBONYL)THIOPHENE-2-CARBOXYLIC ACID
4
ORO
1
Ligand/Ion
OROTIC ACID
5
SO4
5
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:307 , PRO A:308 , ASP A:311 , THR A:314 , GLN A:315 , ARG A:318 , HOH A:424
BINDING SITE FOR RESIDUE ACT A 401
2
AC2
SOFTWARE
ARG A:245 , VAL A:247 , HIS A:248 , HOH A:450
BINDING SITE FOR RESIDUE SO4 A 402
3
AC3
SOFTWARE
ARG A:246 , ARG A:249
BINDING SITE FOR RESIDUE SO4 A 403
4
AC4
SOFTWARE
ARG A:160 , GLN A:325
BINDING SITE FOR RESIDUE SO4 A 404
5
AC5
SOFTWARE
PRO A:130 , ARG A:131 , HOH A:606
BINDING SITE FOR RESIDUE SO4 A 405
6
AC6
SOFTWARE
SER A:262 , LYS A:265 , ALA A:291 , GLY A:292 , GLU A:319 , HOH A:438 , HOH A:517 , HOH A:638 , HOH A:646
BINDING SITE FOR RESIDUE SO4 A 406
7
AC7
SOFTWARE
ALA A:95 , ALA A:96 , GLY A:97 , LYS A:100 , GLY A:119 , SER A:120 , ASN A:145 , TYR A:147 , ASN A:181 , ASN A:212 , LYS A:255 , THR A:283 , ASN A:284 , THR A:285 , SER A:305 , GLY A:306 , VAL A:333 , GLY A:334 , GLY A:335 , LEU A:355 , TYR A:356 , THR A:357 , ORO A:399 , HOH A:410 , HOH A:423
BINDING SITE FOR RESIDUE FMN A 398
8
AC8
SOFTWARE
LYS A:100 , ASN A:145 , TYR A:147 , GLY A:148 , PHE A:149 , ASN A:212 , SER A:215 , ASN A:217 , ASN A:284 , THR A:285 , FMN A:398
BINDING SITE FOR RESIDUE ORO A 399
9
AC9
SOFTWARE
TYR A:38 , LEU A:42 , LEU A:46 , GLN A:47 , ALA A:55 , HIS A:56 , ALA A:59 , PHE A:62 , LEU A:67 , LEU A:68 , ARG A:136 , TYR A:356 , LEU A:359 , THR A:360 , PRO A:364 , HOH A:474
BINDING SITE FOR RESIDUE ILF A 407
[
close Site info
]
SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_062413 (R136C, chain A, )
2: VAR_062414 (G153R, chain A, )
3: VAR_062415 (R200C, chain A, )
4: VAR_062416 (G203A, chain A, )
5: VAR_062417 (G203D, chain A, )
6: VAR_062418 (R245W, chain A, )
7: VAR_062419 (T285I, chain A, )
8: VAR_062420 (R347W, chain A, )
9: VAR_062421 (D393G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_062413
R
135
C
PYRD_HUMAN
Disease (POADS)
---
A
R
136
C
2
UniProt
VAR_062414
G
152
R
PYRD_HUMAN
Disease (POADS)
---
A
G
153
R
3
UniProt
VAR_062415
R
199
C
PYRD_HUMAN
Disease (POADS)
---
A
R
200
C
4
UniProt
VAR_062416
G
202
A
PYRD_HUMAN
Disease (POADS)
---
A
G
203
A
5
UniProt
VAR_062417
G
202
D
PYRD_HUMAN
Disease (POADS)
---
A
G
203
D
6
UniProt
VAR_062418
R
244
W
PYRD_HUMAN
Disease (POADS)
---
A
R
245
W
7
UniProt
VAR_062419
T
284
I
PYRD_HUMAN
Disease (POADS)
---
A
T
285
I
8
UniProt
VAR_062420
R
346
W
PYRD_HUMAN
Disease (POADS)
---
A
R
347
W
9
UniProt
VAR_062421
D
392
G
PYRD_HUMAN
Disease (POADS)
---
A
D
393
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: DHODEHASE_1 (A:114-133)
2: DHODEHASE_2 (A:330-350)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DHODEHASE_1
PS00911
Dihydroorotate dehydrogenase signature 1.
PYRD_HUMAN
113-132
1
A:114-133
2
DHODEHASE_2
PS00912
Dihydroorotate dehydrogenase signature 2.
PYRD_HUMAN
329-349
1
A:330-350
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.2 (A:33-79)
Exon 1.3 (A:80-146)
Exon 1.4 (A:146-174)
Exon 1.5 (A:174-236)
Exon 1.6 (A:237-274)
Exon 1.7 (A:275-326)
Exon 1.8 (A:326-379)
Exon 1.9 (A:379-396)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000219240
1
ENSE00001420633
chr16:
72042643-72042684
42
PYRD_HUMAN
1-7
7
0
-
-
1.2
ENST00000219240
2
ENSE00000799143
chr16:
72045949-72046161
213
PYRD_HUMAN
8-78
71
1
A:33-79
47
1.3
ENST00000219240
3
ENSE00000692663
chr16:
72048372-72048571
200
PYRD_HUMAN
79-145
67
1
A:80-146
67
1.4
ENST00000219240
4
ENSE00000692662
chr16:
72050923-72051005
83
PYRD_HUMAN
145-173
29
1
A:146-174
29
1.5
ENST00000219240
5
ENSE00000692661
chr16:
72055023-72055210
188
PYRD_HUMAN
173-235
63
1
A:174-236
63
1.6
ENST00000219240
6
ENSE00000692660
chr16:
72056261-72056374
114
PYRD_HUMAN
236-273
38
1
A:237-274
38
1.7
ENST00000219240
7
ENSE00001718063
chr16:
72057064-72057217
154
PYRD_HUMAN
274-325
52
1
A:275-326
52
1.8
ENST00000219240
8
ENSE00001662402
chr16:
72057373-72057532
160
PYRD_HUMAN
325-378
54
1
A:326-379
54
1.9
ENST00000219240
9
ENSE00001737850
chr16:
72058044-72058954
911
PYRD_HUMAN
378-395
18
1
A:379-396
18
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2fpya_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
Dihydroorotate dehydrogenase
(90)
Human (Homo sapiens) [TaxId: 9606]
(24)
1a
d2fpya_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2fpyA00 (A:33-396)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
2fpyA00
A:33-396
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
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Sidechain
Hetero
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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