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2FN3
Asym. Unit
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Asym.Unit (98 KB)
Biol.Unit 1 (363 KB)
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(1)
Title
:
HIGH RESOLUTION STRUCTURE OF S26A MUTANT OF BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA COMPLEXED WITH THIAMINE THIAZOLONE DIPHOSPHATE
Authors
:
A. K. Bera, M. S. Hasson
Date
:
10 Jan 06 (Deposition) - 19 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Lyase, Carbon-Carbon, Decarboxylase, Mandelate Catabolism, Thiamine Thiazolone Diphosphate, High Resolution
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. K. Bera, M. S. Hasson
High Resolution Structure Of Benzoylformate Decarboxylase Active Site Mutant S26A From Pseudomonas Putida Complexed With Thiamine Thiazolone Diphosphate
To Be Published
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: MAGNESIUM ION (MGa)
3a: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5... (TZDa)
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No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
TZD
1
Ligand/Ion
2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGENDIPHOSPHATE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:117 , LEU A:118 , ARG A:120 , HOH A:801
BINDING SITE FOR RESIDUE MG A 531
2
AC2
SOFTWARE
ASP A:428 , ASN A:455 , THR A:457 , TZD A:530 , HOH A:535
BINDING SITE FOR RESIDUE CA A 532
3
AC3
SOFTWARE
GLU A:37 , ASP A:364 , HOH A:691 , HOH A:703 , HOH A:838
BINDING SITE FOR RESIDUE CA A 533
4
AC4
SOFTWARE
ASP A:347 , ALA A:416 , HOH A:698 , HOH A:701 , HOH A:711 , HOH A:772 , HOH A:901
BINDING SITE FOR RESIDUE CA A 534
5
AC5
SOFTWARE
ASN A:23 , PRO A:24 , GLY A:25 , GLU A:47 , HIS A:70 , ASN A:77 , THR A:377 , SER A:378 , GLY A:401 , LEU A:403 , GLY A:427 , ASP A:428 , GLY A:429 , SER A:430 , TYR A:433 , ASN A:455 , THR A:457 , TYR A:458 , GLY A:459 , ALA A:460 , CA A:532 , HOH A:542 , HOH A:627
BINDING SITE FOR RESIDUE TZD A 530
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TPP_ENZYMES (A:411-430)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPP_ENZYMES
PS00187
Thiamine pyrophosphate enzymes signature.
MDLC_PSEPU
411-430
1
A:411-430
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d2fn3a1 (A:182-341)
2a: SCOP_d2fn3a2 (A:2-181)
2b: SCOP_d2fn3a3 (A:342-525)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
Pyruvate oxidase and decarboxylase, middle domain
(74)
Protein domain
:
Benzoylformate decarboxylase
(32)
Pseudomonas putida [TaxId: 303]
(32)
1a
d2fn3a1
A:182-341
Fold
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Superfamily
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Family
:
automated matches
(65)
Protein domain
:
automated matches
(65)
Pseudomonas putida [TaxId: 303]
(26)
2a
d2fn3a2
A:2-181
2b
d2fn3a3
A:342-525
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2fn3A03 (A:342-525)
1b: CATH_2fn3A01 (A:2-179)
2a: CATH_2fn3A02 (A:180-341)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.970, no name defined]
(144)
Pseudomonas putida. Organism_taxid: 303.
(8)
1a
2fn3A03
A:342-525
1b
2fn3A01
A:2-179
Homologous Superfamily
:
TPP-binding domain
(120)
Pseudomonas putida. Organism_taxid: 303.
(8)
2a
2fn3A02
A:180-341
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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